|
|
Python |
296 |
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids |
May 03, 2023 |
|
|
None |
2 |
Rapid large-scale prokaryote pan genome analysis |
May 20, 2022 |
|
|
Python |
2 |
Run several analysis on bacterial genomes |
Jul 19, 2019 |
|
|
Nextflow |
9 |
A pipeline for bioinformatics analysis of bacterial genomes |
Apr 04, 2023 |
|
|
Perl |
6 |
:bangbang: Rapid core genome SNP alignments from multiple bacterial genomes |
Mar 26, 2023 |
|
|
Python |
5 |
analysis tools for large-scale neural recordings |
Jul 15, 2023 |
|
|
Nextflow |
177 |
A flexible pipeline for complete analysis of bacterial genomes |
Sep 05, 2022 |
|
|
Python |
92 |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins |
Jun 06, 2022 |
|
|
Python |
155 |
Benchmarking of long-read assembly tools for bacterial whole genomes |
Feb 23, 2023 |
|
|
C++ |
455 |
hybrid assembly pipeline for bacterial genomes |
Apr 24, 2023 |
|
|
Python |
22 |
GC Skew Test for Bacterial Genomes |
Sep 09, 2022 |
|
|
Jupyter Notebook |
17 |
Reference Phylogeny for Bacterial and Archaeal Genomes |
Feb 16, 2023 |
|
|
C++ |
3 |
De novo genome assembler for bacterial genomes |
Apr 13, 2023 |
|
|
Jupyter Notebook |
38 |
Prediction of prophages from bacterial genomes |
Aug 13, 2022 |
|
|
Jupyter Notebook |
32 |
From annotated genomes to metabolic screening in large scale microbiotas |
Mar 01, 2023 |
|
|
C++ |
2 |
Sorghum pangenome analysis |
Dec 17, 2021 |
|
|
Python |
161 |
Build a partitioned pangenome graph from microbial genomes |
Apr 30, 2023 |
|
|
Python |
3 |
tools for analysis of diffraction images and large-scale image data processing |
Mar 27, 2020 |
|
|
Python |
9 |
A collection of power system analysis tools. Optimized for large-scale grid. |
Dec 12, 2022 |
|
|
Python |
2 |
Paddle Large Scale Classification Tools |
Jul 18, 2022 |
|
|
Roff |
17 |
:microscope: :o: Plasmid exploration of bacterial genomes |
Mar 27, 2023 |
|
|
Shell |
7 |
Large-scale Data Analysis supplementary material. |
Apr 05, 2023 |
|
|
Python |
2 |
Some tools for large-scale video processing |
May 29, 2023 |
|
|
Perl |
26 |
Identify phage regions in bacterial genomes for masking purposes |
Apr 21, 2023 |
|
|
C++ |
15 |
An MPI Toolkit for large-scale genomic analysis |
May 11, 2022 |
|
|
Python |
11 |
DICOM Extraction for Large-scale Image Analysis (DELIA). |
May 08, 2023 |
|
|
Python |
40 |
reference-based long read assemblies of bacterial genomes |
Mar 21, 2023 |
|
|
F* |
37 |
Bioinformatics tool to find integrons in bacterial genomes |
Aug 25, 2022 |
|
|
Perl |
65 |
Tools for the analysis of structural variation in genomes |
Mar 15, 2023 |
|
|
Python |
3 |
Filter Prokka assemblies for pangenome analysis |
Nov 23, 2021 |
|
|
Nextflow |
14 |
Analyze a set of genomes with the anvi'o pangenome pipeline |
Mar 18, 2022 |
|
|
C |
241 |
Large-scale Monitoring and Trend Analysis System |
Aug 14, 2022 |
|
|
C |
3 |
Large-scale Monitoring and Trend Analysis System |
Mar 08, 2014 |
|
|
Python |
71 |
a collection of scripts for organising bacterial genomes by species |
Jan 17, 2023 |
|
|
None |
5 |
In silico multi-locus sequence typing (MLST) for bacterial genomes |
Mar 18, 2021 |
|
|
R |
108 |
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks |
Apr 20, 2023 |
|
|
Python |
239 |
A tool for generating consensus long-read assemblies for bacterial genomes |
Apr 24, 2023 |
|
|
Python |
85 |
Rapid determination of appropriate reference genomes. |
Mar 08, 2023 |
|
|
Python |
182 |
Rapid comparison and dereplication of genomes |
May 22, 2023 |
|
|
Scala |
211 |
An open-source toolkit for large-scale genomic analysis |
Aug 12, 2022 |
|
|
None |
2 |
Student resources for CS 535 Large Scale Data Analysis |
Aug 31, 2023 |
|
|
C++ |
9 |
Collection of ANalysis DEsigned for Large-scale Atomic simulations |
Jun 05, 2023 |
|
|
Nextflow |
2 |
Assign objective taxonomic classifications to bacterial and archaeal genomes |
Aug 26, 2022 |
|
|
Python |
16 |
Finding prophage regions in bacterial genomes using brute force |
Jan 24, 2022 |
|
|
C++ |
2 |
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes |
May 20, 2022 |
|
|
Perl |
66 |
:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads |
Apr 18, 2023 |
|
|
Python |
2 |
Rapid In Silico SeroTyping for three swine bacterial pathogens |
Nov 23, 2023 |
|
|
Nextflow |
2 |
nextflow pipeline for Mycobacterium bovis pangenome analysis. |
Nov 25, 2022 |
|
|
Common Workflow Language |
3 |
This a CWL workflow to turn bacterial genomes from ensembl into a VG pangenome variation … |
Sep 10, 2019 |
|
|
Python |
4 |
A library for the large scale analysis of Jupyter notebooks |
Jun 01, 2022 |