Stars
13
Forks
6
Language
Python
Last Updated
Nov 26, 2021
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
Scala | 26 | WDL and CWL compiler for the DNAnexus platform | Feb 09, 2023 | |
Shell | 2 | DNAnexus custom applets and workflows | May 06, 2020 | |
Common Workflow Language | 3 | CWL workflows | Dec 14, 2020 | |
Common Workflow Language | 3 | various example cwl workflows | Oct 05, 2021 | |
Common Workflow Language | 74 | [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0 | Mar 15, 2023 | |
Shell | 2 | Repository to hold wrapper apps for bcbio CWL on DNAnexus | Sep 09, 2018 | |
Python | 13 | Framework for testing CWL tools and workflows | May 30, 2022 | |
None | 2 | In-progress and example CWL tools/workflows | Jun 18, 2020 | |
JavaScript | 3 | Interactive visualisation of CWL workflows | Jul 17, 2018 | |
Common Workflow Language | 20 | CWL for GDC DNASeq workflows | Mar 01, 2023 | |
Common Workflow Language | 2 | cwl workflows for public tools | Apr 19, 2023 | |
Common Workflow Language | 2 | Zavolan-Lab repository for CWL Tools and Workflows | Jun 11, 2020 | |
Python | 14 | Trigger CWL workflows via GA4GH WES and TES | Mar 15, 2023 | |
JavaScript | 8 | React component for visualizing CWL-like workflows (and similar data) | May 05, 2022 | |
Common Workflow Language | 2 | CWL for running analysis pipeline scripts as workflows | Nov 16, 2021 | |
Makefile | 3 | Demo for using MinIO object store with Nextflow and CWL workflows | Aug 04, 2022 | |
Python | 40 | Create cwl workflows by writing a simple Python script | May 28, 2022 | |
Vue | 29 | Visualizer of CWL (Common Workflow Language) workflows for Vue | Mar 15, 2023 | |
Groovy | 25 | Import a CWL workflow specification to Nextflow script (experimental) | Mar 06, 2023 | |
Haskell | 9 | Compose and run computational workflows | Nov 28, 2021 | |
TypeScript | 73 | A library for generating an interactive SVG visualization of CWL workflows | Mar 29, 2023 | |
Python | 2 | (pre-alpha) Automatically add and remove python import statements | May 08, 2022 | |
Ruby | 69 | Model business workflows and run them. | Apr 22, 2022 | |
None | 2 | Exported Okta Workflows ready for import! | Aug 11, 2022 | |
Common Workflow Language | 5 | Training for using Visual Studio Code to develop CWL workflows on Arvados | Jul 07, 2022 | |
Python | 2 | Import workflows for the Wikipedia Citations Database | May 19, 2022 | |
None | 12 | Profile for provenance research object of a CWL workflow run | Mar 01, 2021 | |
Python | 2 | run snakemake workflows on AWS. | Mar 04, 2023 | |
Go | 2 | Run DART jobs and workflows without a GUI. | Mar 09, 2023 | |
Jupyter Notebook | 5 | 📋 Template to build CWL workflows to convert data to a RDF Knowledge Graph and … | Jan 27, 2021 | |
Common Workflow Language | 20 | A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS … | Aug 08, 2022 | |
None | 3 | GitHub Actions hook to run Aspect Workflows https://aspect.build/workflows | Mar 24, 2023 | |
Common Workflow Language | 2 | Introduction to CWL and Docker | Jan 10, 2023 | |
None | 2 | Repository containing the ARC ontology (currently only ISA-JSON model; cwl is wip (runs & workflows)) | Feb 07, 2023 | |
Python | 8 | Runflow is a tool to define and run workflows. | Apr 05, 2022 | |
R | 33 | R engine to orchestrate and run (meta)data workflows | Mar 31, 2023 | |
Python | 11 | Easily run WDL workflows on GCP | Nov 26, 2021 | |
Java | 14 | ImageJ plugins to run ilastik workflows | Nov 08, 2022 | |
None | 2 | Run ScanCode.io pipelines from your Workflows | Jan 30, 2024 | |
JavaScript | 555 | Run ES Module syntax (`import`, `import()`, and `export`) in any browser – even IE! | Apr 20, 2022 | |
Shell | 24 | GitHub Action for secured CyberArk Conjur secret retrieval and import into Workflows | Apr 05, 2023 | |
Shell | 2 | GitHub Action for secured CyberArk Conjur secret retrieval and import into Workflows | Nov 04, 2023 | |
Common Workflow Language | 6 | A collection of cwl-ica workflows along with a user guide for the commands to use … | Aug 25, 2022 | |
Clojure | 29 | Run tools-deps-alpha as a native binary. | Feb 18, 2022 | |
Rust | 451 | scp has a run-in with mosh (alpha) | Apr 18, 2023 | |
Dockerfile | 2 | Run Kalix CLI commands in GitHub workflows | Jan 26, 2023 | |
wdl | 3 | Workflows to run ADAPT on AWS Batch. | Mar 03, 2022 | |
Shell | 4 | example to run Deep Learning model to predict DNA sequence features with Kipoi with DNAnexus … | Feb 13, 2020 | |
JavaScript | 9 | ⚒️ Import .tool-versions of asdf to GitHub Actions workflows. | Apr 20, 2023 | |
None | 9 | Github Action to run Dockle and report in workflows, pipeline and PR's | Dec 31, 2022 |