Stars
127
Forks
69
Language
wdl
Last Updated
Mar 29, 2023
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| wdl | 2 | Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools | Jul 19, 2022 | |
| wdl | 4 | Workflows for somatic short variant discovery with GATK4 | Jul 19, 2022 | |
| wdl | 117 | Workflows for germline short variant discovery with GATK4 | Mar 14, 2023 | |
| wdl | 48 | Workflows for processing RNA data for germline short variant discovery with GATK v4 and related … | Apr 26, 2023 | |
| wdl | 46 | Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related … | Apr 14, 2023 | |
| Python | 2 | High throughput sequencing analysis tools | Oct 01, 2018 | |
| HTML | 3 | utilities for processing high-throughput sequencing experiments | Feb 28, 2023 | |
| wdl | 2 | Workflows used for germline short variant discovery in WGS data - replaced by https://github.com/microsoft/gatk4-genome-processing-pipeline-azure | Jul 19, 2022 | |
| Scala | 240 | Tools for working with genomic and high throughput sequencing data. | Aug 10, 2022 | |
| Nextflow | 10 | Workflow for germline short variant discovery using GATK4 | Sep 12, 2022 | |
| R | 4 | Tools for pre-processing high-throughput animal tracking data. | Feb 17, 2023 | |
| wdl | 4 | Workflows for germline short variant discovery with GATK4 optimized by Intel for on-premises infrastructure | Apr 12, 2021 | |
| C | 631 | C library for high-throughput sequencing data formats | Aug 11, 2022 | |
| C | 5 | C library for high-throughput sequencing data formats | Apr 05, 2023 | |
| C | 3 | C library for high-throughput sequencing data formats | Jul 18, 2019 | |
| C | 4 | C library for high-throughput sequencing data formats | Jan 07, 2022 | |
| C++ | 14 | Identifying repeats in high-throughput sequencing data | Aug 15, 2022 | |
| Shell | 4 | This repository hosts scripts and tools for analysis of high throughput sequencing data. | Jan 03, 2022 | |
| wdl | 52 | Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline | Dec 03, 2021 | |
| Python | 13 | A server for maintaining high-throughput sequencing QC data | May 09, 2023 | |
| Python | 2 | High-throughput sequencing pipeline software | Oct 19, 2019 | |
| None | 21 | Machine learning workflows for analyzing high-throughput protein data | Jun 22, 2022 | |
| HTML | 5 | Analysis Framework for Biological Data from High Throughput Sequencing Experiments | May 04, 2015 | |
| Java | 241 | A Java API for high-throughput sequencing data (HTS) formats. | Aug 09, 2022 | |
| Python | 4 | Pipeline for BLAST analysis of high-throughput DNA sequencing data. | Aug 01, 2017 | |
| Java | 307 | A quality control analysis tool for high throughput sequencing data | Apr 27, 2023 | |
| TeX | 510 | Specifications of SAM/BAM and related high-throughput sequencing file formats | Aug 08, 2022 | |
| TeX | 3 | Specifications of SAM/BAM and related high-throughput sequencing file formats | May 10, 2020 | |
| Python | 5 | Assembly of Phylogenomic Datasets from High-Throughput Sequencing data | Dec 21, 2022 | |
| Python | 19 | Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis | Apr 10, 2023 | |
| R | 5 | R package for inferring multiple infections from high-throughput sequencing data | Jul 07, 2021 | |
| Java | 6 | SeqCode: Java code for the analysis of high-throughput sequencing data | Mar 03, 2023 | |
| Python | 7 | HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data | Apr 17, 2023 | |
| Python | 54 | High throughput workflows and automation for HPC | Aug 11, 2022 | |
| C | 2 | A high-throughput analysis framework for Y-chromosomal next-generation sequencing data | Mar 08, 2022 | |
| R | 5 | Teaching materials for Copenhagen course in high throughput sequencing data for population genetics | Aug 26, 2022 | |
| C++ | 36 | Streaming fragment assignment and quantification for high-throughput sequencing. | Apr 19, 2023 | |
| wdl | 3 | Workflows used for processing whole genome sequence data + germline variant calling. | Jul 19, 2022 | |
| JavaScript | 25 | A high throughput automated drug discovery pipeline. | Apr 29, 2023 | |
| Python | 4 | Best-practice pipelines for fully automated high throughput sequencing analysis | Apr 28, 2021 | |
| C++ | 5 | Methods for the detection and assembly of novel sequence in high-throughput sequencing data | Apr 05, 2023 | |
| HTML | 13 | Processing high-throughput drug indication resources. | Sep 11, 2022 | |
| Shell | 11 | High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis | Jan 16, 2023 | |
| C | 8 | HTSlib high-throughput sequencing library as an R package | May 04, 2022 | |
| wdl | 5 | Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure | Aug 06, 2021 | |
| HTML | 37 | A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor | Dec 28, 2022 | |
| Python | 4 | tools for the processing of genome-wide bisulfite sequencing data | Aug 07, 2018 | |
| C++ | 13 | A stream processing framework for high-throughput applications | May 09, 2023 | |
| Python | 60 | A stream processing framework for high-throughput applications. | Mar 22, 2023 | |
| PHP | 88 | A graphical user interface for distributed data processing of high throughput genomics | Jun 19, 2022 |