Stars
72
Forks
22
Language
Jupyter Notebook
Last Updated
Dec 31, 2023
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
R | 6 | Pipeline for generating RNAseq-based cancer patient reports | Aug 06, 2022 | |
Nextflow | 14 | NeoFlow: a proteogenomics pipeline for neoantigen discovery | Jun 29, 2022 | |
Nextflow | 14 | NeoFlow: a proteogenomics pipeline for neoantigen discovery | Jun 29, 2022 | |
Python | 11 | Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA | Mar 21, 2023 | |
Nextflow | 32 | nextNEOpi: a comprehensive pipeline for computational neoantigen prediction | Aug 03, 2022 | |
Common Workflow Language | 19 | CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens | Jan 18, 2023 | |
Jupyter Notebook | 2 | SMURF: Machine learning pipeline for discovering cancer type specific driver mutations and diagnostic markers | May 24, 2022 | |
C++ | 3 | Bioinformatics core RNAseq pipeline | Mar 08, 2023 | |
Python | 2 | a bioinformatics fungal pipeline | Jan 07, 2023 | |
Python | 2 | bioinformatics pipeline framework for data analysis | Jul 29, 2019 | |
Perl | 2 | Bioinformatics pipeline for analyzing metagenomic data | Oct 31, 2023 | |
Python | 12 | Patient-Specific Modeling in Python | Apr 04, 2023 | |
Jupyter Notebook | 3 | Inferring patient-specific regulatory alterations | May 03, 2023 | |
Jupyter Notebook | 2 | Canine breast cancer analysis pipeline | Sep 23, 2021 | |
None | 3 | The ARTIC field bioinformatics pipeline | Feb 02, 2022 | |
Python | 4 | Bioinformatics pipeline based on Ruffus | Mar 08, 2019 | |
None | 26 | Bioinformatics Pipeline and Visualization resources | May 04, 2023 | |
R | 4 | Structural variation analysis pipeline for cancer genomes | Jan 10, 2022 | |
Perl | 13 | iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for … | Aug 18, 2022 | |
HTML | 2 | Create cancer bioinformatics reports from metadata and workflow output | Mar 03, 2023 | |
R | 15 | The Cancer bioMarker Prediction Pipeline (CAMPP) | Jul 30, 2022 | |
Python | 3 | Bioinformatics pipeline to process EHI data | Mar 30, 2023 | |
Python | 28 | Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer | Jun 30, 2022 | |
Python | 4 | Bioinformatics pipeline for hologenomics data generation and analysis | Nov 15, 2021 | |
Nextflow | 9 | A pipeline for bioinformatics analysis of bacterial genomes | Apr 04, 2023 | |
Python | 2 | Collection of Snakemake pipeline for commin bioinformatics tasks | Aug 30, 2023 | |
Python | 12 | Snakemake workflow for neoantigen prediction | Apr 28, 2023 | |
Shell | 25 | A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now) | May 29, 2021 | |
Java | 7 | Jenkins plugin for selecting a Run based on specific parameters | Jan 09, 2020 | |
Python | 3 | Detects and Predicts the presence of Prostate Cancer in a patient | Apr 26, 2023 | |
Nextflow | 13 | A containerized bioinformatics pipeline for viral metagenomic data analysis | Apr 30, 2023 | |
HTML | 4 | Developing patient-specific phosphoproteomic models using mechanistic autoencoders | Aug 11, 2022 | |
Perl | 8 | predict neoantigen for indel and snvs | Jan 18, 2023 | |
Python | 3 | Artificial Intelligence Powered Prediction for Online Adaptive Patient Specific QA | Apr 03, 2023 | |
Python | 3 | Identification of heterogeneous biomarkers for breast cancer using Clustering and PageRank algorithms (bioinformatics) | Apr 07, 2022 | |
HTML | 3 | Course material for the BIOS691 "Cancer Bioinformatics" course, January 25 - May 7, 2021 | Aug 10, 2022 | |
Nextflow | 2 | Nextflow pipeline to discover ecDNA on cancer genomes | Apr 27, 2022 | |
Nextflow | 20 | Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub | Jul 15, 2022 | |
C | 65 | My collection of light bioinformatics analysis pipelines for specific tasks | Mar 27, 2023 | |
Python | 7 | IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results | Mar 02, 2021 | |
HTML | 16 | Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models | Aug 22, 2021 | |
Nextflow | 2 | A comprehensive cancer WGS/WTS analysis and reporting pipeline | May 30, 2023 | |
Python | 4 | RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes | Apr 28, 2022 | |
C++ | 16 | Allele-Specific Quantification of Structural Variations in Cancer Genomes | Feb 02, 2022 | |
Nextflow | 22 | A bioinformatics best-practice analysis pipeline for epitope prediction and annotation | Aug 19, 2022 | |
Nextflow | 3 | rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis | Apr 08, 2023 | |
Groovy | 3 | Bioinformatics pipeline for analysis of amplicon sequencing of tick-associated microbes | Apr 06, 2023 | |
Common Workflow Language | 31 | A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing. | Mar 25, 2023 | |
Common Workflow Language | 9 | A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing. | Mar 29, 2023 | |
R | 6 | A bioinformatics pipeline for the evolution analysis of m6A in plants | Aug 23, 2022 |