|
Python |
4 |
Generate Highlighted SVG/PNG for KEGG Pathway |
Apr 24, 2023 |
|
Java |
19 |
A Cytoscape app for importing KGML(KEGG pathway XML) |
Jul 22, 2021 |
|
Python |
4 |
Python code to download and parse KEGG pathway kgml file |
Nov 10, 2022 |
|
Python |
2 |
A command-line interface and biochemical pathway finder based on KEGG |
May 19, 2019 |
|
R |
2 |
Testing function enrichment in genes of interest, e.g., Pfam, InterPro, Gene Ontology, KEGG Pathway. |
Sep 01, 2023 |
|
Jupyter Notebook |
2 |
Utils for working with KEGG data on NetworkX |
Nov 19, 2020 |
|
Java |
5 |
Biological pathway data integration and access platform (Pathway Commons) |
Dec 13, 2022 |
|
Java |
10 |
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data |
Dec 13, 2022 |
|
R |
3 |
Pathway enrichment of metabolomics data |
Jul 31, 2022 |
|
JavaScript |
2 |
Web UI for accessing Pathway Commons data |
Apr 16, 2023 |
|
HTML |
4 |
Resource for pathway analysis and Pathway Commons |
May 06, 2020 |
|
None |
2 |
Guidelines and protocols for Pathway Analysis of omics data |
Jun 22, 2022 |
|
Python |
38 |
A simple script to convert data in CSV format to iCal format |
Aug 15, 2022 |
|
HTML |
4 |
Tool to visualize KEGG networks |
Apr 14, 2022 |
|
R |
23 |
Pathway-based trajectory inference method for time-series scRNAseq data |
Jan 12, 2022 |
|
JavaScript |
4 |
Pathway Builder |
Feb 02, 2022 |
|
Solidity |
2 |
pathway protocol logic here: https://docs.gton.capital/learn/pathway |
Apr 16, 2022 |
|
R |
3 |
CTGSA : Covariance Thresholding for Gene Set Analysis of Genetic Pathway Data |
Dec 10, 2020 |
|
Jupyter Notebook |
2 |
A pathway-inferring VAE modification for single-cell gene expression data |
Dec 03, 2022 |
|
R |
3 |
Client-side REST access to KEGG |
Jun 10, 2022 |
|
PHP |
2 |
php format script |
Jan 15, 2021 |
|
Python |
5 |
Cookiecutter Pathway is a framework for jumpstarting production-ready Pathway projects quickly. |
Jun 20, 2023 |
|
None |
9 |
mapping files for MetaCyc pathway |
Apr 02, 2023 |
|
PHP |
7 |
Script to convert XML data into wp-importer acceptable format |
Mar 16, 2019 |
|
C++ |
6 |
Biological Pathway Visualization |
Jun 15, 2022 |
|
R |
25 |
Reactome Pathway Analysis |
Aug 03, 2022 |
|
C++ |
4 |
Metabolic pathway generator |
Oct 11, 2021 |
|
None |
4 |
reimplement kofamscan using hmm-utils for KEGG Knumber annotation |
Mar 16, 2022 |
|
None |
45 |
Data format specification schema for the NWB neurophysiology data format |
Jan 17, 2023 |
|
JavaScript |
24 |
A project to capture biological pathway data from academic papers |
Dec 12, 2022 |
|
R |
22 |
Differential gene expression analysis and pathway analysis of RNAseq data |
Apr 19, 2022 |
|
PHP |
2 |
A simple PHP script to display vnstat data in table format. |
Oct 21, 2022 |
|
Python |
3 |
Metabolic pathway inference using multi-label classification with rich pathway features |
Sep 19, 2021 |
|
Python |
3 |
LabXchange Pathway Plugin for Open edX |
Oct 01, 2021 |
|
JavaScript |
37 |
A python package for pathway visualization |
Dec 30, 2022 |
|
Python |
7 |
Pathway Tools multiprocessing wrapper (for PathoLogic). |
Mar 10, 2023 |
|
Dockerfile |
2 |
A dockerfile for multiprocessing Pathway-Tools. |
Apr 27, 2023 |
|
TypeScript |
2 |
Front-end for Training Pathway app. |
Jul 12, 2023 |
|
Python |
7 |
Overrepresentation analysis for KEGG and PID pathways using community detection |
Jun 30, 2021 |
|
Perl |
2 |
Perl script to format text into documentation format. |
Sep 09, 2014 |
|
Go |
2 |
KEGG Pathway 物种通路数据(keg 格式)抓取、本地提取、转化为 tsv 数据格式、HTML 下载 |
Jun 14, 2021 |
|
Jupyter Notebook |
2 |
Contains projects completed while completing the Data Engineering pathway on Dataquest |
Jan 13, 2023 |
|
Python |
4 |
A Pathway Analysis pipeline |
Aug 13, 2021 |
|
Jupyter Notebook |
2 |
Metabolic Pathway Analysis course |
Jun 16, 2022 |
|
TypeScript |
2 |
[UNI PROJECT] Patient Pathway |
Jan 28, 2023 |
|
R |
2 |
Centrality-based pathway enrichment |
Jun 14, 2022 |
|
Python |
2 |
Pathway Module 2 Challenge |
Jan 13, 2023 |
|
Jupyter Notebook |
2 |
Vitis vinifera pathway expansion |
Jun 17, 2023 |
|
R |
2 |
metabolomics pathway enrichment analysis |
Dec 05, 2022 |
|
Ruby |
5 |
Visualization of KEGG pathways from genomic/metagenomic samples |
Jul 19, 2018 |