Stars
5
Forks
0
Language
Makefile
Last Updated
Feb 11, 2021
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
C++ | 247 | :microscope: Assemble large genomes using short reads | Aug 01, 2022 | |
Python | 26 | Software to assemble contigs/scaffolds into chromosomes using Hi-C data | Mar 27, 2023 | |
Nextflow | 9 | A nextflow pipeline for decontamination of short reads, long reads and contigs | May 30, 2022 | |
Python | 14 | Assembly scaffolder using long reads and minimizers | Jul 05, 2022 | |
Python | 4 | Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … | Apr 06, 2023 | |
Groovy | 6 | Assemble PacBio Hifi reads into a genome and perform QC stats | Apr 14, 2023 | |
C++ | 11 | A scaffold assemble pipeline for stLFR reads. | Apr 20, 2022 | |
Shell | 15 | A pipeline to de novo assemble the stLFR reads using Supernova Assembler | Jul 29, 2022 | |
Python | 2 | Assemble HiFi reads and identify genes of interest | Dec 08, 2021 | |
C++ | 33 | Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes) | Sep 09, 2022 | |
C++ | 92 | Aligns short reads using dynamic seed size with strobemers | May 05, 2023 | |
Python | 4 | Generating UTRs from SHort Reads | Jan 01, 2023 | |
Perl | 66 | :dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads | Apr 18, 2023 | |
Perl | 5 | 👮Targeted Assembly of Short Reads | Mar 04, 2022 | |
Python | 8 | Metaphor: Metagenomics Pipeline for Short Reads | Jun 14, 2022 | |
C | 11 | Short reads aligner for NIPT/CNV | Feb 25, 2023 | |
Nim | 22 | Kmer based genotyper for short reads. | Nov 25, 2021 | |
Perl | 14 | MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) | Mar 01, 2023 | |
Python | 85 | Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies. | Mar 14, 2023 | |
Perl | 175 | ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads | Apr 21, 2023 | |
Perl | 21 | 🍶Genome assembly with short sequence reads | Jul 23, 2022 | |
Nim | 7 | Fragment-Aware Local Assembly for Short-reads | Nov 28, 2020 | |
C++ | 4 | Developed for assemble the genomes with second-generation sequencing data, especially using the Illumina short reads. … | Aug 03, 2022 | |
Python | 2 | A simple nextflow script to run iteratively pilon for polishing long read contigs with Illumina … | Apr 01, 2022 | |
Perl | 2 | Assemble multiple Regular Expressions into a single RE | Mar 14, 2023 | |
Python | 10 | Align short reads against viral genomes in protein space | Jan 31, 2022 | |
C++ | 68 | A tool for profiling long STRs from short reads | Apr 14, 2023 | |
Python | 22 | Simulate metagenomic short reads from one or more populations. | Apr 07, 2023 | |
Nextflow | 3 | Nextflow pipeline for the analysis of metagenomic short reads. | Apr 28, 2023 | |
Python | 52 | GraphBin: Refined binning of metagenomic contigs using assembly graphs | May 18, 2022 | |
Python | 2 | Tool to visualise and cluster assembly contigs using kmers | Oct 26, 2023 | |
Python | 2 | several small python scripts to analyse long read and short read data for scaffolding MHC … | Sep 17, 2023 | |
Nextflow | 3 | UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads | Aug 25, 2021 | |
HTML | 12 | An RNA virus strain-level identification tool for short reads. | Mar 30, 2022 | |
Python | 20 | a simple read-only sequence database, designed for short reads | Sep 09, 2022 | |
Java | 50 | :hibiscus: reference-free transcriptome assembly for short and long reads | Aug 12, 2022 | |
Python | 56 | a simple read-only sequence database, designed for short reads | Feb 17, 2023 | |
Python | 2 | Visualisation of trimming or soft-clipping of short sequence reads | Sep 24, 2022 | |
Rust | 2 | Strain-level haplotyping for metagenomes with short or long-reads. | Nov 09, 2023 | |
Python | 2 | Reads gerrit stream events into redis | Jun 21, 2021 | |
Python | 9 | This is a deep learning method for identification of viral contigs with short length from … | Mar 27, 2023 | |
C++ | 12 | Finding putative exons and constructing splicegraphs using Trans-ABySS contigs | Mar 30, 2022 | |
Python | 35 | Remove contaminated contigs from genomes using k-mers and taxonomies. | Apr 17, 2023 | |
C | 61 | dysgu-SV is a collection of tools for calling structural variants using short or long reads | May 10, 2023 | |
JavaScript | 7 | Gulp plugin - assemble resources using cujoJS cram | Aug 13, 2019 | |
JavaScript | 10 | Example of using swig templates with Assemble. | Apr 12, 2021 | |
PHP | 9 | Assemble x86, i386, x86_64 instructions using PHP. | Oct 15, 2022 | |
C | 67 | Standalone C library for assembling Illumina short reads in small regions | May 08, 2022 | |
TeX | 101 | De novo assembly based variant calling pipeline for Illumina short reads | Aug 12, 2022 | |
Python | 16 | GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs | May 18, 2022 |