cTRAP

Identification of candidate causal perturbations from differential gene expression data

Stars

4

Forks

1

Language

R

Last Updated

Feb 12, 2024

Similar Repos
Repo Language Stars Description Updated At
R 22 Differential gene expression analysis and pathway analysis of RNAseq data Apr 19, 2022
Perl 2 Basic analysis of bacterial RNAseq data for differential gene expression Sep 13, 2022
R 20 Inferring gene co-expression networks from single cell gene expression data Feb 07, 2023
HTML 2 Estimate tumor purities from gene expression data May 15, 2023
Python 2 De novo assembly, Differential gene expression, and annotation workflow Jul 08, 2022
Rust 3 Efficient Differential Expression and Gene Aggregation for CRISPR screens. Mar 06, 2023
JavaScript 20 Interactive Visual Analysis of differential gene expression test results Aug 26, 2021
Vue 7 An application for exploring and visualizing differential gene expression data created with DESeq2 Apr 10, 2023
R 260 Differential gene expression analysis based on the negative binomial distribution May 09, 2023
None 57 RNA-seq workflow: gene-level exploratory analysis and differential expression Apr 27, 2023
HTML 71 A simple RNA-Seq differential gene expression pipeline using Nextflow May 15, 2023
R 8 Analysies of gene expression data using Gene Ontology Nov 27, 2020
Python 2 Tissue classification from Gene Expression. Feb 07, 2023
Python 2 Constructs a Bayesian network of gene regulation from binary expression data and makes inferences about … Dec 17, 2022
Jupyter Notebook 2 Visualization of gene expression data from GeoMx-DSP experiments May 12, 2022
Python 95 Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads Feb 07, 2023
R 3 Analyze ERCC spike-in RNA controls in Differential Gene Expression Experiments Jul 06, 2015
Perl 10 Code base for profiling highly replicated differential gene expression RNA-seq. Jan 09, 2023
R 2 Discover biological conditions associated with differential gene expression by compiling information from >10,000 published experiments Dec 09, 2021
Python 32 A fully automated gene annotator from RNA-Seq expression data May 13, 2022
R 6 Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene … Apr 01, 2023
Python 19 "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17, Mar 22, 2023
R 67 EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems … Jul 05, 2022
JavaScript 11 AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works Apr 15, 2022
Jupyter Notebook 5 Classifying TCGA+TARGET+GTEX Gene Expression Data Nov 04, 2019
Jupyter Notebook 6 Visualize CCLE gene expression data using Clustergrammer. Jul 17, 2021
HTML 25 Visual exploratory analysis of gene expression data Aug 08, 2022
R 2 Tuberculosis Gene Expression Data for Machine Learning Apr 18, 2022
None 8 A treatise on quantification and differential expression from RNA-seq data Nov 05, 2015
R 2 Gene Expression Phylogenies Jan 28, 2023
R 8 Riborex: Fast and flexible identification of differential translation from Ribo-seq data Apr 09, 2021
Python 5 Differential expression analysis. Aug 05, 2022
R 5 CellSIUS: Cell Subtype Identification from Upregulated gene Sets Nov 07, 2022
C++ 29 Software for exploration of gene expression data from single-cell RNA sequencing. May 10, 2022
C++ 348 RSEM: accurate quantification of gene and isoform expression from RNA-Seq data Apr 27, 2023
Python 13 Tools for generating single-cell gene expression data Mar 10, 2023
R 2 Transcriptional Inference using Gene Expression and Regulatory data May 13, 2023
HTML 5 from gene expression counts to sounds in R Aug 13, 2021
R 21 Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, … Mar 20, 2023
Jupyter Notebook 2 Transfer learning + gene expression Nov 04, 2020
HTML 12 Gene expression viewer template Feb 01, 2022
R 34 Interactive Differential Expression Analyzer May 23, 2022
R 4 Robust longitudinal Differential Expression May 09, 2023
Python 2 A library for differential expression and gene set enrichment analysis based on hydra and pydantic. Aug 15, 2023
R 6 Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data Dec 21, 2021
HTML 8 Predicting gene expression using epigenomics data and deep learning Aug 11, 2020
Jupyter Notebook 69 Towards Gene Expression Convolutions using Gene Interaction Graphs Apr 10, 2023
Python 155 Differential expression analysis for single-cell RNA-seq data. Apr 06, 2023
None 2 Differential expression analysis for single-cell RNA-seq data Apr 14, 2021
R 9 Differential expression analysis for single-cell RNA-seq data Nov 15, 2022