tgviz

1000 Genomes Project population visualizations using dimensionality reduction

Stars

11

Forks

5

Language

Python

Last Updated

Feb 04, 2024

Similar Repos
Repo Language Stars Description Updated At
Jupyter Notebook 2 Studies using Dimensionality Reduction Apr 27, 2022
Jupyter Notebook 3 Mini project on Dimensionality Reduction Jan 18, 2023
Python 222 TriMap: Large-scale Dimensionality Reduction Using Triplets Aug 09, 2022
Jupyter Notebook 4 Feature Engineering, Dimensionality Reduction Jan 02, 2023
JavaScript 9 Dimensionality reduction for JavaScript Sep 12, 2022
Jupyter Notebook 2 Autoencoder dimensionality reduction +RL Apr 15, 2021
R 26 Examples using R and 1000 genomes data Feb 21, 2023
Python 6 Dimensionality Reduction with Neural Networks Jan 19, 2021
Jupyter Notebook 2 Benchmarks of dimensionality reduction algorithms Dec 14, 2021
Scala 2 Distributed Spectral Dimensionality Reduction (DSDR) Feb 12, 2016
C++ 2 Parallel MDR (Multifactor dimensionality reduction) Apr 05, 2024
Python 274 Dimensionality reduction in very large datasets using Siamese Networks Jul 24, 2022
Python 29 Reducing reference bias using multiple population reference genomes Feb 21, 2023
Jupyter Notebook 2 An analysis of the 1000 Genomes Project in PyTorch Jun 25, 2021
R 27 :bookmark: Get SNP proxies from the 1000 Genomes Project. Mar 10, 2023
Cuda 2 Dimensionality reduction ("dimreduce") on GPUs ("4gpu") Aug 09, 2022
Python 35 genotype dimensionality reduction with a VAE Feb 15, 2023
Python 5 A framework for parametric dimensionality reduction May 05, 2023
Jupyter Notebook 5 Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project Jan 09, 2023
Python 2 Dimensionality Reduction of World Bank Dataset using Self Organizing Map. May 31, 2022
R 8 Dimensionality Reduction via Regression using Kernel Ridge Regression in R Mar 04, 2022
R 2 Extra Tidymodels Recipe Steps for Dimensionality Reduction Aug 03, 2022
Jupyter Notebook 2 EDA | Dimensionality Reduction | Feature Selection Validation | Modeling Apr 21, 2023
Python 17 Implementation of TriMap dimensionality reduction in PyTorch Jun 30, 2022
C++ 195 t-SNE dimensionality reduction technique for openFrameworks Mar 17, 2023
C 12 OpenFrameworks addon for PCA dimensionality reduction technique Aug 13, 2019
R 74 A Framework for Dimensionality Reduction in R Dec 10, 2022
HTML 70 PHATE dimensionality reduction method implemented in R Jan 04, 2023
Perl 6 1000 genomes and Merriman Lab Galaxy Aug 13, 2020
Python 4 Tools for merging 1000 Genomes calls Mar 15, 2023
Jupyter Notebook 6 Inter-Class Clustering of Text Data Using Dimensionality Reduction and BERT Sep 05, 2022
Matlab 8 Principal Component as a tool for Dimensionality Reduction using Hyperspectral images May 16, 2023
Jupyter Notebook 2 5th semester project concerning feature engineering and nonlinear dimensionality reduction in particular. Jun 01, 2023
Python 11 Dimensionality-reduction and classification for morphology and electrophysiology Jun 21, 2022
Python 9 SLISEMAP: Combining supervised dimensionality reduction with local explanations Apr 20, 2023
Jupyter Notebook 2 Implemented various dimensionality reduction techniques for time series Mar 07, 2020
Python 3 A Python toolkit for dimensionality reduction quality assessment May 24, 2022
Python 112 Code for "Effective Dimensionality Reduction for Word Embeddings". Nov 23, 2022
R 19 package for dimensionality reduction under supervised data scenarios Jan 14, 2023
Python 36 Dimensionality reduction for single cell RNA-seq data Dec 09, 2022
Python 4 A python package for multi-view dimensionality reduction Dec 17, 2022
Jupyter Notebook 4 Dimensionality Reduction and visualization technique that compensates for the curse of dimensionality (ICASSP '20) Jun 21, 2021
Java 2 A user-friendly tool to extract data from the 1000 Genomes Project. Jun 21, 2022
Python 6 Manifold optimization for linear dimensionality reduction of MD trajectories Sep 22, 2020
Python 3 The code for the Gravitational Dimensionality Reduction (GDR) algorithm Mar 12, 2023
Jupyter Notebook 2 Evaluating quality of dimensionality reduction map with Wasserstein distances Mar 16, 2021
Java 3 A Processing viewer for the results of dimensionality reduction. May 03, 2022
JavaScript 8 :orange_book: Explore 1000 Genomes variant data with JavaScript. Mar 10, 2022
Matlab 13 Matlab codepack for performing dimensionality reduction on neural data using TD-GPFA or GPFA. Mar 30, 2022
Jupyter Notebook 19 A comparison of the dimensionality reduction results using t-SNE, UMAP, PCA, and TriMap Jul 04, 2022