|
|
None |
14 |
Mapping NCBI Genbank accession to GTDB accession |
Mar 17, 2021 |
|
|
Python |
42 |
Convert GTDB taxonomy to NCBI taxdump format |
Apr 25, 2023 |
|
|
Python |
23 |
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT) |
Mar 31, 2023 |
|
|
Python |
3 |
GTDB-Tk App |
Jan 11, 2022 |
|
|
Python |
3 |
A snakemake for GTDB-tk |
Mar 07, 2023 |
|
|
HTML |
3 |
NCBI CSS |
Jun 07, 2020 |
|
|
C |
78 |
ncbi-vdb |
Aug 10, 2022 |
|
|
None |
18 |
GTDB taxonomy taxdump files with trackable TaxIds |
Aug 26, 2022 |
|
|
CSS |
10 |
NCBI Hackathon Repos |
Jun 10, 2020 |
|
|
Python |
6 |
NCBI PubMed Crawler |
May 11, 2022 |
|
|
R |
2 |
Download NCBI SRA data |
Feb 01, 2022 |
|
|
PHP |
10 |
Local NCBI BLAST+ Search |
Dec 02, 2022 |
|
|
Python |
16 |
Toolkits for NCBI Pubmed |
May 23, 2023 |
|
|
Python |
16 |
Toolkit for establishing, updating, and validating GTDB species clusters |
Mar 15, 2023 |
|
|
CSS |
8 |
Documentation for NCBI BLAST AMI |
Feb 28, 2022 |
|
|
Python |
9 |
PostgreSQL schema for NCBI dbSNP |
Jun 03, 2021 |
|
|
Visual Basic .NET |
3 |
NCBI localblast toolkit for GCModeller |
Oct 28, 2020 |
|
|
C++ |
14 |
NCBI C++ Toolkit package sources |
Aug 04, 2022 |
|
|
Common Workflow Language |
203 |
NCBI Prokaryotic Genome Annotation Pipeline |
Aug 19, 2022 |
|
|
Python |
2 |
NCBI C++ Toolkit package recipe |
Apr 28, 2023 |
|
|
Perl |
2 |
Files for the SBDI Sativa curated GTDB 16S sequence files |
May 07, 2022 |
|
|
Python |
2 |
Tools and scripts for studying the GTDB taxonomy with sourmash |
Mar 05, 2021 |
|
|
Python |
65 |
ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and … |
Apr 20, 2023 |
|
|
Julia |
6 |
Wrapper around the NCBI taxonomy files |
Jan 07, 2022 |
|
|
Go |
2 |
Sync component for NCBI data tool |
Feb 07, 2019 |
|
|
Go |
2 |
CLI client for NCBI data tool |
Jan 27, 2023 |
|
|
R |
167 |
talk with NCBI entrez using R |
May 04, 2022 |
|
|
Python |
2 |
A distributed wrapper for NCBI BLAST |
Aug 24, 2017 |
|
|
None |
3 |
R package for accessing NCBI EUtilities |
Feb 02, 2022 |
|
|
PHP |
4 |
ncbi loader via the eutils interface |
Oct 31, 2022 |
|
|
Python |
4 |
FAIRness assessment for NCBI Hackathon products |
Aug 12, 2021 |
|
|
Python |
4 |
GTDB and RefSeq-RDP DBs parsed for the addSpecies() dada2 function |
Mar 09, 2021 |
|
|
Perl |
3 |
taxon-utils: utils for NCBI taxonomy manipulation |
Mar 04, 2021 |
|
|
Jupyter Notebook |
18 |
ncbi data processing and cloud based genomics |
May 23, 2022 |
|
|
Python |
102 |
🐞 Convert NCBI taxonomy dump into lineages |
Aug 15, 2022 |
|
|
Go |
220 |
A Practical and Efficient NCBI Taxonomy Toolkit |
Oct 20, 2022 |
|
|
Python |
3 |
NCBI unofficial lib integrated with discord bot. |
Apr 10, 2023 |
|
|
R |
23 |
R Interface to the NCBI SRA metadata |
Apr 14, 2023 |
|
|
HTML |
4 |
Complex Phenotypes Team at the NCBI Hackathon |
Apr 14, 2022 |
|
|
Python |
5 |
Implements NCBI Contamination Screen Publicly in CWL |
Mar 23, 2021 |
|
|
Python |
3 |
Creates iTOL files for tree decoration, given a set of GTDB genomes. |
Feb 22, 2023 |
|
|
Perl |
4 |
Download NCBI assembly genomes with ftp. rsync, ascp |
Aug 09, 2022 |
|
|
Python |
3 |
Convert NCBI assembly_summary files into sourmash taxonomy databases. |
Nov 14, 2022 |
|
|
Python |
2 |
Converts the NCBI taxidlineage.dmp file into JSON format. |
Jun 02, 2021 |
|
|
Perl |
25 |
Toolkit for preparing genomes for submission to NCBI |
Oct 22, 2022 |
|
|
JavaScript |
11 |
A nodejs wrapper for the NCBI eUtils API. |
Feb 04, 2023 |
|
|
PHP |
8 |
A PHP wrapper for NCBI BLAST URL API |
Jun 19, 2020 |
|
|
None |
37 |
Short introduction to command line NCBI blast tools |
Mar 21, 2023 |
|
|
Jupyter Notebook |
13 |
Tutorial content for NCBI cloud data and computing |
Sep 27, 2022 |
|
|
Python |
2 |
A conda-smithy repository for ncbi-datasets-cli. |
Apr 14, 2023 |