Stars
5
Forks
5
Language
R
Last Updated
Aug 02, 2023
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
R | 4 | Code and data for study of SARS-CoV-2 environmental stability as a function of temperature and … | May 16, 2023 | |
C++ | 2 | The Autonomous Surface Disinfection Robot to combat SARS-CoV-2. | Nov 14, 2022 | |
None | 8 | SARS-CoV-2 genome data analysis | Mar 30, 2023 | |
None | 2 | SARS-CoV-2_Mpro_structures. Provisional Paper Title "Identification of key interactions between SARS-CoV-2 Main Protease and inhibitor drug … | Sep 25, 2020 | |
Shell | 12 | Ginkgo SARS-CoV-2 synthesis efforts: overviews and data | Sep 27, 2021 | |
HTML | 8 | Data and files from the May 25, 2021 SARS-CoV-2 viral load and infectiousness paper | Jan 20, 2022 | |
Python | 13 | Daily analyses of genomic SARS-CoV-2 data | Jun 07, 2022 | |
HTML | 25 | MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store | Dec 03, 2022 | |
Jupyter Notebook | 5 | Code for analysis of SARS-CoV-2 sequencing based diagnostic testing data | Apr 28, 2022 | |
HTML | 2 | Identities among SARS-CoV-2 variants and SARS-related coronaviruses | Feb 01, 2023 | |
R | 4 | Code and data for "Predicted Symptomatic Effectiveness of Pfizer-BioNTech BNT162b2 Vaccine Against Omicron Variant of … | Dec 23, 2021 | |
Jupyter Notebook | 6 | Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates | Mar 22, 2023 | |
None | 3 | A relational database of SARS-CoV-2 resistance data. | Aug 02, 2022 | |
None | 5 | Data on SARS-CoV-2 serosurveillance. Maintained by SeroTracker. | May 14, 2023 | |
R | 2 | Code for the paper Recent trends in SARS-CoV-2 variants of concern in England | May 21, 2021 | |
R | 16 | This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events … | May 04, 2023 | |
Python | 20 | ARTIC SARS-CoV-2 workflow and reporting | Jun 24, 2022 | |
Jupyter Notebook | 5 | pseudotyping lentiviral virions with SARS-CoV-2 Spike | Jan 07, 2023 | |
R | 7 | Visualization toolkit for SARS-CoV-2 whole genome sequencing data | Aug 07, 2022 | |
Nextflow | 2 | SARS-CoV-2 genome reconstruction for Illumina data in Nextflow | Sep 26, 2023 | |
Python | 8 | Code to accompany paper | Apr 30, 2023 | |
CSS | 4 | Monitor of SARS-CoV-2 variants and mutations | Dec 26, 2021 | |
MATLAB | 3 | Data and simple MATLAB analysis for the SARS-CoV-2 pandemic in SLovakia | Apr 25, 2023 | |
Python | 4 | Quantifying SARS-CoV-2 VoCs from NGS data of wastewater samples | Apr 05, 2023 | |
Python | 2 | Infer a succinct tree sequence from SARS-COV-2 variation data | Jun 19, 2023 | |
HTML | 2 | Code for Analyses of SARS-COV-2 household transmission in Geneva | Apr 13, 2021 | |
None | 2 | SARS-CoV-2 resources for sequencing and genomic analysis | Dec 09, 2021 | |
Jupyter Notebook | 22 | SARS-CoV-2 variant calling and consensus assembly pipeline | Apr 28, 2023 | |
Python | 2 | SARS-CoV-2 variant growth rates and frequency forecasts | Jun 19, 2023 | |
Jupyter Notebook | 4 | codes for paper "PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction" | Feb 16, 2024 | |
Perl | 8 | The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data … | Jan 12, 2023 | |
Python | 3 | A tool that scans VCF data for SARS-CoV-2 Antiviral Resistance | Feb 17, 2023 | |
None | 3 | Code for mechanistic models describing SARS-CoV-2 shedding dynamics in humans | Apr 28, 2022 | |
Python | 6 | Identify and model mutations in the SARS-Cov-2 genome | Sep 11, 2021 | |
Groovy | 9 | Wikidata Queries around the SARS-CoV-2 virus and pandemic | Jan 07, 2022 | |
None | 28 | Collection template and associated materials for SARS-CoV-2 metadata | Dec 02, 2022 | |
Python | 3 | SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and … | Dec 08, 2021 | |
Python | 8 | Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting. | Jun 02, 2022 | |
R | 2 | Code for the publication "The origin and early spread of SARS-CoV-2 in Europe" | Oct 07, 2021 | |
Python | 2 | A Python library and command-line scripts for working with SARS-CoV-2 sequences | Aug 03, 2022 | |
Python | 3 | FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2 | Jul 07, 2022 | |
Jupyter Notebook | 3 | SARS-CoV-2 Drug Discovery using Genetic Algorithm and Deep Learning | Aug 02, 2022 | |
R | 2 | Association between deprivation, ethnicity and SARS-CoV-2 infections in England | Sep 08, 2023 | |
R | 18 | Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to … | Nov 23, 2022 | |
Python | 3 | Identification of mutations in SARS-CoV-2 associated with resistance to treatment. | Jul 19, 2022 | |
CSS | 176 | Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖 | Apr 07, 2023 | |
Jupyter Notebook | 2 | scRNA-seq data integration from "SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis". | May 19, 2023 | |
R | 2 | Code and dataset to evaluate diagnostic performance of rapid SARS-CoV-2 antigen tests in Mexico | Jun 01, 2021 | |
R | 18 | Interoperable secondary data for research on the new COVID-19 coronavirus sars-cov-2 | Mar 09, 2023 | |
R | 2 | Data and code accompanying the preprint "The effectiveness of population-wide screening in reducing SARS-CoV-2 infection … | Mar 01, 2021 |