|
|
C++ |
316 |
Strelka2 germline and somatic small variant caller |
Jun 01, 2023 |
|
|
C# |
88 |
Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows. |
May 15, 2023 |
|
|
Common Workflow Language |
2 |
CWL germline variant caller |
Feb 18, 2023 |
|
|
Common Workflow Language |
6 |
CWL somatic variant caller |
Apr 21, 2023 |
|
|
R |
45 |
Multi-sample somatic variant caller |
Oct 19, 2022 |
|
|
C |
149 |
Microassembly based somatic variant caller for NGS data |
Aug 11, 2022 |
|
|
C++ |
11 |
v2.x of the microassembly based somatic variant caller |
Aug 12, 2022 |
|
|
Nextflow |
186 |
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS … |
Aug 16, 2022 |
|
|
Common Workflow Language |
4 |
Evaluation of long-read support for the MGnify pipeline |
Jan 04, 2022 |
|
|
Common Workflow Language |
4 |
Current stable CWL v1.1 specification |
Jul 19, 2022 |
|
|
Common Workflow Language |
4 |
CWL interface to the Synapse command line. |
Dec 19, 2021 |
dockstore-workflow-rnaseq
|
Common Workflow Language |
4 |
None |
Feb 16, 2022 |
|
|
Common Workflow Language |
4 |
Workflows for processing rare disease data on Synapse. |
Feb 18, 2022 |
|
|
Common Workflow Language |
4 |
Mapping using PCAP |
Nov 08, 2021 |
|
|
Common Workflow Language |
5 |
CWL demonstration pipelines |
Dec 17, 2020 |
|
|
Common Workflow Language |
6 |
Materials to teach workshop about CWL using the Rabix Composer |
Jul 19, 2022 |
|
|
Common Workflow Language |
6 |
A collection of cwl-ica workflows along with a user guide for the commands to use … |
Aug 25, 2022 |
|
|
Common Workflow Language |
7 |
Tidy Common Workflow Language Tools and Workflows |
Dec 14, 2021 |
|
|
Common Workflow Language |
8 |
Pipelines developed and used by 4DN-DCIC in Common Workflow Language |
Jun 01, 2020 |
|
|
Common Workflow Language |
8 |
cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a … |
Jul 19, 2022 |
Tumor-Deconvolution-Challenge-Workflow
|
Common Workflow Language |
8 |
None |
Dec 10, 2020 |
|
|
Common Workflow Language |
1353 |
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊 |
Aug 12, 2022 |
|
|
Common Workflow Language |
3 |
None |
Mar 24, 2023 |
|
|
Common Workflow Language |
2 |
CWL for running analysis pipeline scripts as workflows |
Nov 16, 2021 |
|
|
Common Workflow Language |
19 |
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens |
Jan 18, 2023 |
|
|
Common Workflow Language |
8 |
:microscope: Alignment workflow for Kids-First DRC |
Jan 25, 2023 |
|
|
Common Workflow Language |
7 |
:microscope: Joint genotyping workflow for Kids-First DRC |
Feb 04, 2023 |
|
|
Common Workflow Language |
8 |
:microscope: RNA-Seq workflow for Kids-First DRC |
Feb 17, 2023 |
|
|
Common Workflow Language |
9 |
:microscope: Somatic workflow for Kids-First |
Feb 27, 2023 |
|
|
Common Workflow Language |
4 |
⚕️ Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide … |
Jan 09, 2023 |
|
|
Common Workflow Language |
4 |
🥝 Core repository with Docker, CWL, Argo scripts for the d2s tool |
Apr 05, 2023 |
|
|
Common Workflow Language |
10 |
None |
Jan 31, 2023 |
cwl-live-coding-2019-12-16
|
Common Workflow Language |
2 |
None |
Apr 13, 2022 |
|
|
Common Workflow Language |
2 |
REANA example - ROOT6/ RooFit based physics analysis |
Dec 02, 2021 |
|
|
Common Workflow Language |
2 |
A collection of challenge CWL tool and workflow templates to connect with SynapseWorkflowOrchestrator. |
Dec 15, 2021 |
|
|
Common Workflow Language |
2 |
ATAC-seq pipelines for HuBMAP |
Feb 18, 2022 |
|
|
Common Workflow Language |
2 |
EO satellite RGB composites |
Dec 08, 2020 |
|
|
Common Workflow Language |
3 |
Wetlab2Variations Workflow Demonstrator |
Oct 02, 2019 |
|
|
Common Workflow Language |
3 |
various example cwl workflows |
Oct 05, 2021 |
|
|
Common Workflow Language |
3 |
None |
Feb 16, 2022 |
|
|
Common Workflow Language |
3 |
🐙⠀exploring the largest ocean in dev county |
Jul 09, 2021 |
|
|
Common Workflow Language |
3 |
Standardized workflows for AMP-AD data processing and analysis |
Mar 03, 2022 |
|
|
Common Workflow Language |
3 |
Central location for CWL CommandLineTools |
Dec 11, 2020 |
|
|
Common Workflow Language |
14 |
None |
Jan 22, 2019 |
|
|
Common Workflow Language |
17 |
H3ABioNet 16S rDNA diverstity analysis package |
Apr 13, 2022 |
|
|
Common Workflow Language |
17 |
None |
Apr 20, 2021 |
|
|
Common Workflow Language |
17 |
Released CWL v1.2 specification |
Jul 19, 2022 |
|
|
Common Workflow Language |
20 |
This repository contains the CWL description of the EBI Metagenomics pipeline |
May 12, 2022 |
|
|
Common Workflow Language |
20 |
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS … |
Aug 08, 2022 |
|
|
Common Workflow Language |
24 |
None |
Aug 11, 2022 |