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C++ |
2 |
Cross-population analysis using the individual-level GWAS data |
Mar 01, 2023 |
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Python |
5 |
GWAS Summary Statistics Data Harmonisation |
Apr 07, 2022 |
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Shell |
6 |
Format of GWAS summary statistics. |
Jun 01, 2021 |
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Python |
2 |
GWAS Summary Statistics File Validator |
Oct 20, 2023 |
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|
Python |
33 |
Convert GWAS summary statistics to VCF |
Mar 24, 2023 |
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C |
21 |
Causal Mixture Model for GWAS summary statistics |
Aug 18, 2022 |
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TeX |
9 |
Documentation on new GWAS Summary Statistics Standard |
Apr 26, 2023 |
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Python |
5 |
Python library for reading GWAS summary statistics in GWAS-VCF files |
Mar 16, 2022 |
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Python |
18 |
Harmonise GWAS summary statistics against a reference VCF |
Jul 02, 2022 |
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Python |
4 |
Fast GWAS on linear combinations of traits using only summary statistics |
Jul 01, 2023 |
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Python |
8 |
polygenic scores using variational inference on GWAS summary statistics from multiple cohorts |
Jun 16, 2022 |
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Python |
4 |
A generic and scaleable GWAS summary statistics table formatter |
Mar 02, 2022 |
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Python |
10 |
A collection of various utilities for GWAS summary statistics |
Aug 18, 2022 |
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|
Python |
22 |
harmonization, liftover, and imputation of summary statistics from GWAS |
May 20, 2022 |
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|
C |
25 |
Tools to work with GWAS-VCF summary statistics files |
May 17, 2023 |
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C++ |
15 |
:hammer: Tool for GWAS summary-level data analysis |
Apr 27, 2023 |
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R |
39 |
Rapid standardisation and quality control of GWAS or QTL summary statistics |
Apr 07, 2023 |
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HTML |
3 |
Comparison between VCF and plain text storage formats for GWAS summary statistics |
Jan 31, 2021 |
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C++ |
4 |
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping |
Dec 21, 2022 |
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HTML |
2 |
GWAS analysis using FaST-LMM. |
Nov 22, 2021 |
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R |
7 |
Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics |
Apr 29, 2023 |
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R |
5 |
A short analysis of population statistics given specific inputs |
Nov 21, 2022 |
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R |
2 |
https://hakyimlab.github.io/Workshop-GWAS-Summary-Harmonization/ |
Nov 12, 2023 |
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R |
2 |
Connecting GWAS summary data to analytical tools |
Apr 29, 2023 |
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Python |
2 |
Summary statistics service |
Aug 19, 2023 |
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None |
3 |
Flow Analysis Summary Statistics Tool (FASST) for Excel. An analysis tool to summarize and visualize … |
Dec 20, 2021 |
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Python |
23 |
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/ https://gwaslab.com/python-gwaslab/ |
Apr 19, 2023 |
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Python |
6 |
Summary statistics with HDF5 |
Oct 19, 2021 |
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R |
14 |
Summary statistics for repertoires |
Feb 16, 2022 |
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R |
2 |
The Summary Statistics Module |
Dec 18, 2022 |
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MATLAB |
44 |
Regression with Summary Statistics. |
Feb 07, 2023 |
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Rust |
2 |
Command line summary statistics |
Jan 27, 2023 |
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Nextflow |
2 |
Family-based GWAS analysis pipeline |
Jul 07, 2020 |
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R |
4 |
GWAS analysis for cardiovascular disease |
Jul 10, 2022 |
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Python |
42 |
Population balance analysis |
Dec 11, 2022 |
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Julia |
22 |
Fast, LoopVectorization.jl-based summary statistics |
Apr 20, 2022 |
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HTML |
10 |
From QC to summary statistics |
Aug 04, 2022 |
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|
HTML |
34 |
Reading, querying and writing GWAS summary data in VCF format |
Apr 08, 2023 |
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Python |
3 |
Software to infer latent pleiotropic components from GWAS summary data |
Apr 03, 2023 |
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|
Jupyter Notebook |
2 |
A Gene Prioritization Framework designed for the summary GWAS Studies. |
Apr 27, 2023 |
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R |
3 |
R package for performing Mendelian randomization with GWAS summary data |
Mar 29, 2023 |
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C++ |
3 |
GWAS and biological data analysis tool |
Dec 28, 2014 |
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R |
2 |
Population analysis tools pipeline |
Jun 21, 2023 |
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R |
2 |
R-package for structural equation modeling based on GWAS summary data |
Mar 03, 2021 |
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R |
2 |
Population and Mortality Statistics for South Africa |
Jan 29, 2017 |
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|
HTML |
4 |
Static website for DataCite summary statistics |
Feb 17, 2023 |
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Go |
17 |
A commandline utility for summary statistics |
Feb 20, 2022 |
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|
Python |
2 |
Summary statistics for GeoJSON feature properties |
May 19, 2017 |
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R |
4 |
An R package for epidemiological analysis using population data |
Mar 01, 2022 |
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Python |
7 |
The scripts I used for GWAS analysis. |
Aug 23, 2019 |