|
|
Nextflow |
9 |
Joint calling of gVCF, following GATK4 Best Practices |
Apr 08, 2022 |
|
|
Nextflow |
7 |
GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping. |
Jun 27, 2022 |
|
|
None |
7 |
(Not only) coding guidelines and best practices hub. |
Jan 17, 2022 |
|
|
Nextflow |
7 |
Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices |
Dec 11, 2021 |
|
|
C# |
4 |
FOR DEMO PURPOSES ONLY, NOT FOR PRODUCTION USE. NOT FOR SALE |
Aug 04, 2022 |
|
|
Liquid |
2 |
FOR DEMO PURPOSES ONLY, NOT FOR PRODUCTION USE. NOT FOR SALE |
Apr 22, 2022 |
|
|
Liquid |
2 |
FOR DEMO PURPOSES ONLY, NOT FOR PRODUCTION USE. NOT FOR SALE |
Oct 22, 2021 |
|
|
TypeScript |
3 |
FOR DEMO PURPOSES ONLY, NOT FOR PRODUCTION USE. NOT FOR SALE |
Apr 01, 2022 |
|
|
C# |
2 |
Demo Solution Features. FOR DEMO PURPOSES ONLY, NOT FOR PRODUCTION USE. NOT FOR SALE |
Oct 22, 2021 |
|
|
C# |
18 |
A demo project used for educational purposes for teaching advance design patterns and practices |
May 30, 2023 |
|
|
Jupyter Notebook |
2 |
Only for demo purposes |
Aug 25, 2020 |
|
|
Shell |
10 |
Demo application using GitOps best practices with Flux |
Jun 06, 2022 |
|
|
HTML |
63 |
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both … |
Apr 03, 2023 |
|
|
JavaScript |
2 |
Basic repository for training purposes only. |
Sep 03, 2021 |
|
|
wdl |
4 |
Workflows for somatic short variant discovery with GATK4 |
Jul 19, 2022 |
|
|
wdl |
4 |
Repo For the WDL Testathon held February 18 - 19, 2020 |
Mar 20, 2020 |
|
|
wdl |
4 |
ENCODE DNase-seq pipeline |
Feb 28, 2021 |
|
|
wdl |
6 |
A coot trans flag using GitHub language colors! |
Apr 19, 2022 |
pb-human-wgs-workflow-wdl
|
wdl |
6 |
None |
Jul 25, 2022 |
|
|
wdl |
7 |
bioinformatics pipelines |
Mar 10, 2022 |
|
|
wdl |
7 |
This is primarily a repo for capturing policies and discussions around the different workflows for … |
Jan 31, 2022 |
|
|
wdl |
8 |
None |
Jul 14, 2022 |
|
|
wdl |
10 |
Utility workflows for the DSP hydro.gen team (formerly palantir) |
Apr 03, 2022 |
|
|
wdl |
10 |
a place for topmed workflows |
Feb 03, 2022 |
|
|
wdl |
12 |
None |
May 27, 2022 |
|
|
wdl |
2 |
A Dockstore WDL Workflow that uses UShER to place your consensus.fasta sequences on the SARS-CoV-2 … |
Nov 13, 2021 |
|
|
wdl |
2 |
WDL workflows to build genetic maps from sequencing reads |
Mar 16, 2023 |
|
|
wdl |
2 |
Metagenome Annotation Workflow |
Apr 25, 2023 |
|
|
wdl |
2 |
None |
Apr 25, 2023 |
|
|
wdl |
13 |
Evaluating genome assemblies |
Apr 18, 2023 |
public_health_bacterial_genomics
|
wdl |
24 |
None |
Mar 14, 2023 |
public_health_bioinformatics
|
wdl |
6 |
None |
Apr 17, 2023 |
|
|
wdl |
30 |
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, … |
Dec 14, 2022 |
|
|
wdl |
4 |
None |
Mar 07, 2023 |
|
|
wdl |
38 |
Cloud-based scalable and efficient single-cell genomics workflows |
Dec 14, 2022 |
|
|
wdl |
2 |
A Cromwell workflow to call and filter variants from sequencing data. |
Mar 28, 2022 |
|
|
wdl |
5 |
Abraham's lab - ChipSeq Pipeline |
Feb 24, 2023 |
cromwell-output-reorganization
|
wdl |
2 |
None |
Apr 26, 2022 |
|
|
wdl |
2 |
Workflows used for germline short variant discovery in WGS data - replaced by https://github.com/microsoft/gatk4-genome-processing-pipeline-azure |
Jul 19, 2022 |
|
|
wdl |
2 |
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools |
Jul 19, 2022 |
|
|
wdl |
2 |
Workflows for converting between sequence data formats |
Jul 19, 2022 |
|
|
wdl |
2 |
Subroutines of WARP for germline exome calling |
Jul 20, 2022 |
|
|
wdl |
2 |
Cromwell integration testing environment |
Dec 11, 2020 |
|
|
wdl |
2 |
Autogenerated WDLs for GATK Tools |
Jan 05, 2022 |
|
|
wdl |
2 |
Sample dockstore whalesay repo for testing |
Nov 22, 2021 |
|
|
wdl |
2 |
Pipeline Workflows |
Oct 20, 2019 |
topmed-workflow-variant-calling
|
wdl |
2 |
None |
Jun 20, 2020 |
|
|
wdl |
3 |
Workflows used for processing whole genome sequence data + germline variant calling. |
Jul 19, 2022 |
|
|
wdl |
3 |
Workflows to run ADAPT on AWS Batch. |
Mar 03, 2022 |
|
|
wdl |
3 |
Broad fungal method repository |
Mar 22, 2022 |