Stars
247
Forks
146
Language
MATLAB
Last Updated
May 11, 2024
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| TypeScript | 18 | calcium imaging pipeline tool | Apr 21, 2023 | |
| Python | 54 | Platform for Calcium Imaging analysis. DEPRECATED. | Mar 25, 2023 | |
| MATLAB | 99 | Matlab routines for online non-rigid motion correction of calcium imaging data | May 29, 2022 | |
| Jupyter Notebook | 478 | Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, … | Aug 22, 2022 | |
| Python | 5 | Widgets for calcium imaging analysis visualization in notebooks | Jan 20, 2023 | |
| Python | 2 | DataJoint Element for miniscope calcium imaging analysis with CaImAn | Jan 31, 2023 | |
| MATLAB | 11 | MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data | Jun 28, 2022 | |
| MATLAB | 51 | A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline. | May 31, 2023 | |
| Jupyter Notebook | 2 | Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn | Jan 11, 2023 | |
| Jupyter Notebook | 24 | High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn | Mar 13, 2023 | |
| Shell | 7 | Large-scale Data Analysis supplementary material. | Apr 05, 2023 | |
| None | 21 | A table containing imaging analysis tools for biology, with a focus on calcium imaging. | Nov 10, 2022 | |
| Python | 6 | Code for doing large-scale structure studies with the imaging data. | Nov 23, 2020 | |
| Perl | 7 | Complete analysis pipeline for PAR-CLIP data | Dec 31, 2022 | |
| Shell | 2 | Large-scale RDF-based Data Quality Assessment Pipeline | Jun 04, 2020 | |
| Jupyter Notebook | 2 | Python package for Large Scale Imaging research @ NLeSC | Feb 23, 2018 | |
| TeX | 2 | Data, Software,Results and Publications for the Large Scale Imaging research @ NLeSc | Aug 06, 2018 | |
| Python | 7 | DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p | Mar 26, 2023 | |
| None | 2 | Student resources for CS 535 Large Scale Data Analysis | Aug 31, 2023 | |
| MATLAB | 8 | MatLab implementation of paper "Large-scale holographic particle 3D imaging with the beam propagation model" | Dec 30, 2022 | |
| Python | 3 | Method for separating overlapping calcium imaging signals | Oct 20, 2023 | |
| Python | 9 | Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p | Apr 23, 2023 | |
| Python | 2 | Synthesising Realistic Calcium Imaging Data of Neuronal Populations Using GAN. | Dec 04, 2021 | |
| JavaScript | 4 | Complete tooling for large-scale Electron apps. | Mar 05, 2022 | |
| R | 40 | Materials for RCC workshop, "Large-scale data analysis in R." | Jul 19, 2022 | |
| C# | 9 | Bonsai package for controlling headborne, calcium imaging miniscopes | Mar 27, 2023 | |
| Jupyter Notebook | 2 | Compression for multiphoton calcium imaging movies and stacks | Nov 02, 2023 | |
| MATLAB | 2 | MATLAB code for paper "Learning compact model for large-scale multi-label data" | Mar 21, 2023 | |
| Kotlin | 2 | Large-scale Web data analysis and collection solutions for various industries. | Mar 22, 2023 | |
| Makefile | 4 | Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr | Dec 13, 2022 | |
| C | 251 | A complete pipeline for metagenomic analysis | Apr 23, 2023 | |
| R | 39 | Large-scale Bayesian variable selection for R and MATLAB. | Aug 09, 2022 | |
| Python | 5 | analysis tools for large-scale neural recordings | Jul 15, 2023 | |
| TypeScript | 2807 | 🌎 Large-scale WebGL-powered Geospatial Data Visualization analysis engine | Sep 01, 2022 | |
| Python | 2 | Pipeline for Organization & Analysis of In Vivo Imaging Experiments | Mar 27, 2023 | |
| Matlab | 24 | This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) … | Mar 19, 2023 | |
| Python | 3 | tools for analysis of diffraction images and large-scale image data processing | Mar 27, 2020 | |
| MATLAB | 2 | Matlab code for solving large-scale sparse group Lasso problems. | May 20, 2022 | |
| C++ | 15 | An MPI Toolkit for large-scale genomic analysis | May 11, 2022 | |
| Python | 11 | DICOM Extraction for Large-scale Image Analysis (DELIA). | May 08, 2023 | |
| MATLAB | 2 | A matlab optical imaging analysis and 3d reconstruction toolbox | Dec 17, 2023 | |
| Jupyter Notebook | 3 | Preprocessing pipeline for 2p imaging and behaviour data. | Jan 31, 2023 | |
| Python | 2 | Pipeline for data analysis | Jun 15, 2017 | |
| C | 241 | Large-scale Monitoring and Trend Analysis System | Aug 14, 2022 | |
| None | 2 | Rapid large-scale prokaryote pan genome analysis | May 20, 2022 | |
| C | 3 | Large-scale Monitoring and Trend Analysis System | Mar 08, 2014 | |
| R | 21 | an integrative analysis tool for analysing large-scale single cell RNA-sequencing data | Apr 13, 2023 | |
| R | 3 | Materials for tutorial, "A survival guide to large-scale data analysis in R." | Oct 28, 2018 | |
| Python | 9 | Offers a toolset for comprehensive, multi-faceted large-scale data analysis and optimizations | Oct 16, 2023 | |
| Ruby | 144 | Data Analysis Pipeline | Jun 16, 2022 |