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R |
7 |
The analytic pipeline used for RNA Sequencing |
May 28, 2020 |
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Nextflow |
4 |
Nextflow pipeline for preprocessing RNA sequencing data. |
Nov 22, 2022 |
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R |
2 |
Perform Exploratory Computational Analyses on Processed Single-Cell RNA-Sequencing Data |
Apr 28, 2022 |
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Nextflow |
42 |
A small-RNA sequencing analysis pipeline |
Aug 10, 2022 |
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R |
4 |
Tidy Transcriptomics for Single-cell RNA Sequencing Analyses |
Jun 27, 2022 |
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Shell |
2 |
Yet another Grape RNA-Seq analyses pipeline |
Jun 03, 2018 |
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R |
4 |
Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses |
Jun 27, 2022 |
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Shell |
2 |
Repository containing some custom EmuELEC scripts |
Aug 14, 2022 |
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R |
9 |
Workflows for comparative analyses of single-cell RNA sequencing data, migrated to the OSCA book. |
Jan 28, 2023 |
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Mathematica |
5 |
Single-cell RNA sequencing pipeline for quantifying intratumor heterogeneity |
Sep 30, 2020 |
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Python |
4 |
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing |
May 23, 2023 |
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Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
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HTML |
19 |
repository for scripts used in UK BioBank analyses |
Oct 12, 2022 |
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R |
3 |
Repository containing the R-code used in analyses for publications. |
Mar 14, 2022 |
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Python |
2 |
Command line utilities for RNA-sequencing data |
Jun 26, 2022 |
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Python |
19 |
Comprehensive analysis of small RNA sequencing data |
Apr 09, 2023 |
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Nextflow |
4 |
Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells) |
Mar 16, 2023 |
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Shell |
11 |
Data and scripts used in the oneKP capstone analyses |
Apr 05, 2022 |
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R |
2 |
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis |
Mar 09, 2023 |
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None |
5 |
Repository containing scripts used for my YouTube tutorials |
Dec 03, 2019 |
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None |
3 |
A repository containing wheels used by build scripts |
Jan 20, 2022 |
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R |
6 |
Probabilistic outlier identification for bulk RNA sequencing data |
Nov 02, 2022 |
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R |
4 |
Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach |
Jul 03, 2022 |
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Jupyter Notebook |
2 |
Pipeline used to assess RNA in CASP15 |
Jan 14, 2024 |
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R |
2 |
Data Processing Pipeline for PRISM Sequencing |
Nov 28, 2023 |
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Perl |
8 |
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing … |
Aug 04, 2022 |
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Python |
7 |
Data Analysis For FLAM-Seq Third Generation RNA Sequencing |
Dec 18, 2022 |
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Python |
3 |
virORF_direct: Protein-level analysis of direct RNA sequencing data |
Dec 21, 2020 |
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HTML |
4 |
Imputing dropout events in single-cell RNA-sequencing data. |
May 07, 2021 |
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Shell |
35 |
Code and data repository for the 2020 physalia course on single cell RNA sequencing. |
Jul 07, 2022 |
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R |
3 |
Miscellaneous data analyses, scripts, notes |
Jun 02, 2020 |
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Nextflow |
2 |
[Under construction] A pipeline for all crispr analyses |
Aug 12, 2022 |
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R |
9 |
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) |
May 23, 2022 |
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Python |
5 |
A pipeline for long-read sequencing data. |
Jun 09, 2019 |
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Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
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Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
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R |
2 |
Wrapper and analysis scripts for RNA variant calling pipeline |
Nov 19, 2023 |
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Swift |
12 |
A repository containing all of my custom keyboards for iOS |
Feb 11, 2022 |
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Python |
4 |
ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data |
May 25, 2022 |
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Nextflow |
12 |
Complete analysis workflow for single-cell/nuclei RNA-sequencing data. |
Jan 05, 2022 |
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Perl |
107 |
Discovering known and novel miRNAs from small RNA sequencing data |
Apr 30, 2023 |
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R |
9 |
Repository for CCBR single cell RNA-Seq pipeline |
Jun 16, 2022 |
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Python |
2 |
Best practices, scripts and workflows for performing bulk RNA-seq expression analyses |
Jul 27, 2023 |
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Nextflow |
3 |
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control |
Dec 15, 2021 |
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HCL |
3 |
Repository containing all needed scripts and configurations for out infrastructure |
Mar 04, 2022 |
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C++ |
4 |
Circall is a novel method to discover circular RNA from paired-end RNA sequencing data |
Dec 07, 2022 |
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Python |
12 |
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data |
Jan 04, 2023 |
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Python |
3 |
Various scripts for sequencing data analysis |
Jan 03, 2023 |
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Nextflow |
11 |
UNDER CONSTRUCTION: Demultiplexing pipeline for Illumina sequencing data |
Jul 14, 2022 |
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Shell |
32 |
A simplified pipeline for ctDNA sequencing data analysis |
Apr 23, 2023 |