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Jupyter Notebook |
9 |
Extracting gene sets from published pathway figures |
Aug 09, 2022 |
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Perl |
2 |
Pathway reconstruction and identity gene loss |
Nov 25, 2021 |
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R |
2 |
Stabilized COre gene and Pathway Election |
Sep 17, 2022 |
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R |
4 |
Gene Ontology Gene Sets from BioMart |
Apr 07, 2023 |
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Jupyter Notebook |
40 |
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms |
Apr 17, 2023 |
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R |
52 |
R package for Pathway RespOnsive GENe activity inference |
Aug 05, 2022 |
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R |
5 |
Package to analyse gene sets |
Feb 11, 2020 |
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None |
2 |
MSigDB gene sets for mouse |
Nov 03, 2023 |
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R |
22 |
Differential gene expression analysis and pathway analysis of RNAseq data |
Apr 19, 2022 |
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None |
2 |
ConsensusTME Gene Sets and R Script |
Jul 07, 2022 |
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R |
27 |
ConsensusTME Gene Sets and R Script |
Mar 29, 2023 |
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Python |
2 |
Ranks a user supplied gene set against KnowEnG's gene sets collection |
Jul 31, 2020 |
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R |
3 |
CTGSA : Covariance Thresholding for Gene Set Analysis of Genetic Pathway Data |
Dec 10, 2020 |
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Jupyter Notebook |
2 |
A pathway-inferring VAE modification for single-cell gene expression data |
Dec 03, 2022 |
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R |
10 |
Building Gene Sets and Mapping mFISH Data |
May 22, 2022 |
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R |
3 |
Collection of classes to store gene sets. |
May 11, 2020 |
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None |
336 |
SVG sets compilation for popular iconic projects |
Oct 31, 2022 |
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Jupyter Notebook |
5 |
SpatialCorr: Identify gene sets with spatially varying correlation |
May 11, 2022 |
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R |
5 |
CellSIUS: Cell Subtype Identification from Upregulated gene Sets |
Nov 07, 2022 |
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Shell |
2 |
Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models. |
Mar 12, 2023 |
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R |
2 |
Data package providing gene sets from Enrichr in R |
Feb 24, 2023 |
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Go |
2 |
Taxonomy and gene function (GO, Pathway) querying web service based on open bioinformatics database |
Oct 26, 2021 |
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R |
2 |
Testing function enrichment in genes of interest, e.g., Pfam, InterPro, Gene Ontology, KEGG Pathway. |
Sep 01, 2023 |
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Python |
12 |
MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets |
Feb 02, 2023 |
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R |
52 |
MSigDB gene sets for multiple organisms in a tidy data format |
Sep 30, 2022 |
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HTML |
4 |
Resource for pathway analysis and Pathway Commons |
May 06, 2020 |
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JavaScript |
4 |
Pathway Builder |
Feb 02, 2022 |
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Solidity |
2 |
pathway protocol logic here: https://docs.gton.capital/learn/pathway |
Apr 16, 2022 |
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Java |
5 |
Biological pathway data integration and access platform (Pathway Commons) |
Dec 13, 2022 |
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C++ |
6 |
Biological Pathway Visualization |
Jun 15, 2022 |
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R |
25 |
Reactome Pathway Analysis |
Aug 03, 2022 |
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C++ |
4 |
Metabolic pathway generator |
Oct 11, 2021 |
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MATLAB |
3 |
MetPath is a set of functions for performing metabolic pathway-based gene expression analysis using genome-scale … |
Sep 27, 2023 |
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R |
3 |
A toolbox to find if gene sets and drugs are meaningfully related [in development] |
Jul 17, 2022 |
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R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
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Python |
3 |
Metabolic pathway inference using multi-label classification with rich pathway features |
Sep 19, 2021 |
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Python |
4 |
A Pathway Analysis pipeline |
Aug 13, 2021 |
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Jupyter Notebook |
2 |
Metabolic Pathway Analysis course |
Jun 16, 2022 |
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TypeScript |
2 |
[UNI PROJECT] Patient Pathway |
Jan 28, 2023 |
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R |
2 |
Centrality-based pathway enrichment |
Jun 14, 2022 |
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Python |
2 |
Pathway Module 2 Challenge |
Jan 13, 2023 |
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Jupyter Notebook |
2 |
Vitis vinifera pathway expansion |
Jun 17, 2023 |
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R |
2 |
metabolomics pathway enrichment analysis |
Dec 05, 2022 |
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R |
4 |
R library to annotate gene sets by text mining the RefSeq description and PubMed abstract |
Sep 02, 2022 |
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Perl |
8 |
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019. |
Dec 24, 2021 |
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Java |
10 |
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data |
Dec 13, 2022 |
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Python |
5 |
Cookiecutter Pathway is a framework for jumpstarting production-ready Pathway projects quickly. |
Jun 20, 2023 |
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Java |
2 |
Compilation of Gene Analysis Algorithms and Mutation Search Algorithms for hopefully some useful Machine Learning … |
Aug 10, 2022 |
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Java |
3 |
Gene |
Mar 13, 2019 |
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Python |
2 |
Perturbation based Allosteric Pathway Finder |
Feb 07, 2022 |