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Python |
15 |
Single-cell multi-omics integration using Optimal Transport |
Mar 27, 2023 |
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Jupyter Notebook |
52 |
Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data |
May 02, 2023 |
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HTML |
4 |
Comparison of multi-omic integration methods for single-cell data. |
Aug 07, 2020 |
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Python |
10 |
Dynamic inference from single-cell snapshots by optimal transport |
Feb 17, 2023 |
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Python |
16 |
a unified single-cell data integration framework by optimal transport |
Apr 25, 2023 |
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R |
19 |
Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles |
May 03, 2023 |
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Jupyter Notebook |
23 |
Deep learning model for single-cell inference of multi-omic profiles from a single input modality. |
Jul 05, 2022 |
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Jupyter Notebook |
50 |
Multi-omic velocity inference |
Oct 19, 2022 |
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Python |
15 |
Multi-modal single cell analysis pipelines |
Apr 25, 2023 |
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Python |
2 |
Single cell RNA-seq tools |
Jul 20, 2022 |
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|
TeX |
67 |
Meta Optimal Transport |
Jul 24, 2022 |
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Jupyter Notebook |
29 |
CO-Optimal Transport |
Oct 16, 2022 |
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R |
2 |
Single-cell Interpretation via Multi-kernel LeaRning |
Jan 19, 2022 |
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Python |
68 |
Tools for single-cell data processing |
Aug 12, 2022 |
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None |
8 |
Better interchange for single cell tools |
Jun 20, 2021 |
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Python |
1588 |
POT : Python Optimal Transport |
Sep 04, 2022 |
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Python |
3 |
Pytorch Optimal Transport Library |
Mar 16, 2022 |
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Python |
78 |
Optimal Transport Dataset Distance |
Aug 02, 2022 |
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HTML |
4 |
Python Optimal Transport library |
Dec 31, 2021 |
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None |
2 |
POT : Python Optimal Transport |
May 25, 2020 |
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Python |
5 |
Feature Robust Optimal Transport |
Mar 30, 2023 |
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Jupyter Notebook |
3 |
Dual Regularized Optimal Transport |
Aug 23, 2022 |
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Python |
3 |
Regularized Multimarginal Optimal Transport |
Jul 18, 2023 |
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|
Python |
43 |
MultiMAP for integration of single cell multi-omics |
Jan 25, 2023 |
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|
Python |
2 |
PARAFAC2 for modeling multi-sample single-cell RNAseq. |
Mar 13, 2024 |
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R |
93 |
Some tools for plotting single-cell data |
Apr 30, 2023 |
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R |
2 |
Univariate and multivariate models multi-omic analyses |
Jul 08, 2022 |
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Python |
4 |
Optimal transport-based data integration |
Feb 16, 2022 |
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Julia |
76 |
Optimal transport algorithms for Julia |
Aug 21, 2022 |
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Jupyter Notebook |
2 |
Dynamic optimal transport and generalizations |
Jun 06, 2019 |
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Julia |
3 |
Optimal transport algorithms for Julia |
Dec 19, 2022 |
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Python |
10 |
Benchmark for Optimal transport libraries |
May 01, 2023 |
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Python |
3 |
Large Scale Computational Optimal Transport |
Apr 10, 2023 |
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|
None |
6 |
Mpath: an algorithm for constructing multi-branching cell lineages from single-cell data |
Jun 06, 2022 |
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R |
2 |
single-cell multi-omics study of embryoid body differentiation |
Aug 28, 2022 |
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Python |
13 |
Tools for generating single-cell gene expression data |
Mar 10, 2023 |
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R |
13 |
This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell … |
Apr 20, 2023 |
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R |
4 |
A Comprehensive Toolkit to Analyze Multi-Sample Multi-Condition Single-Cell Transcriptomics Data |
Sep 12, 2022 |
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Jupyter Notebook |
10 |
Optimal Transport and Optimization related experiments. |
May 04, 2023 |
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Python |
51 |
Python implementation of smooth optimal transport. |
May 04, 2023 |
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|
MATLAB |
21 |
MATLAB codes for multilevel optimal transport |
May 10, 2022 |
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None |
2 |
Library of Semi-Relaxed Optimal Transport |
Mar 26, 2022 |
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|
MATLAB |
16 |
Multi-scale Optimal Fusion Model for Single Image Dehazing （matlab code） |
Mar 05, 2022 |
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|
Jupyter Notebook |
13 |
Latent optimal transport (LOT) for low rank transport and clustering |
Apr 16, 2023 |
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|
R |
3 |
Multi-omic integration of public oncology databases in Bioconductor |
Apr 02, 2022 |
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|
Jupyter Notebook |
4 |
Single cell ATAC-Seq preprocessing for single cell explorer |
May 29, 2021 |
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|
R |
19 |
Estimation of Single-Cell Potency with Single Cell Entropy |
May 18, 2023 |
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|
Python |
147 |
Graph-linked unified embedding for single-cell multi-omics data integration |
Aug 05, 2022 |
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|
R |
4 |
Bulk and single-cell Multi-Omics ground truth Simulator in R |
Oct 10, 2023 |
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|
Go |
10 |
Multi transport RPC |
Apr 02, 2023 |