GenBioEL

Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning[NAACL 2022]

Stars

2

Forks

0

Language

None

Last Updated

Jan 27, 2023

Similar Repos
Repo Language Stars Description Updated At
Python 17 PyTorch code for "FactPEGASUS: Factuality-Aware Pre-training and Fine-tuning for Abstractive Summarization" (NAACL 2022) Jun 24, 2022
Jupyter Notebook 57 Convolutional network for entity linking (Naacl 2016) Jul 24, 2021
Python 15 Ensemble Knowledge Guided Sub-network Search and Fine-tuning for Filter Pruning May 04, 2023
Python 93 [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking. Jul 17, 2022
Python 15 Improving Fine-grained Entity Typing with Entity Linking Nov 22, 2021
Python 6 NAACL Paper (IMHO Fine-Tuning Improves Claim Detection) Feb 17, 2021
Python 14 Vectorizing knowledge bases for entity linking Oct 06, 2022
Python 23 Biomedical Data-to-Text Generation via Fine-Tuning Transformers Mar 28, 2023
Java 15 Bio-YODIE is GATE's biomedical named entity linking pipeline. Apr 01, 2022
Jupyter Notebook 17 Entity Linking & Discovery solution. Agarwal et al., NAACL 2022. "Entity Linking via Explicit Mention-Mention … Apr 30, 2023
Jupyter Notebook 4 Human-Like Entity Linking using Contextual knowledge May 16, 2019
Python 101 The PyTorch implementation of fine-tuning the GPT-2(Generative Pre-Training 2) for dialogue generation. Sep 05, 2022
Python 7 Fine-grained Entity Typing without Knowledge base Jul 20, 2022
Python 2 Uncertainty-aware fine-tuning of transformers with NLI data. Jul 06, 2023
None 6 [NAACL 2022] Domain-Oriented Prefix-Tuning: Towards Efficient and Generalizable Fine-tuning for Zero-Shot Dialogue Summarization Jan 31, 2023
Python 335 Fine-Tuning your VITS model using a pre-trained model May 10, 2023
Python 85 [NAACL'22] TaCL: Improving BERT Pre-training with Token-aware Contrastive Learning Mar 30, 2023
Python 88 Efficient Training (including pre-training and fine-tuning) for Big Models Aug 12, 2022
Python 173 Chinese GPT2: pre-training and fine-tuning framework for text generation Jul 29, 2022
Python 70 Fine-tuning SAMs for class-aware computer vision tasks in specific scenarios May 10, 2023
Python 2 Pipeline for fine-tuning pretrained transformers for Named-Entity Recognition (NER) tasks Jun 27, 2022
Python 8 (SparseBERT) Rethinking Network Pruning -- under the Pre-train and Fine-tune Paradigm (NAACL'21) Feb 21, 2023
Python 42 A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking" May 22, 2023
Python 13 CSS-LM: Contrastive Semi-supervised Fine-tuning of Pre-trained Language Models Aug 08, 2022
Python 80 [CVPR 2020] Adversarial Robustness: From Self-Supervised Pre-Training to Fine-Tuning Jun 29, 2022
Python 451 Fast & Simple repository for pre-training and fine-tuning T5-style models Apr 30, 2023
Jupyter Notebook 2 Notebooks for teaching transformers and fine-tuning a pre-trained BERT model May 19, 2023
Jupyter Notebook 4 Generation of Knowledge graph from Unstructured BioMedical(Heart) Data Using Entity Relation Extraction Sep 29, 2022
Python 12 OntoEA: Ontology-guided Entity Alignment via Joint Knowledge Graph Embedding @ ACL'21 Aug 24, 2022
Python 24 PyTorch – SMART: Robust and Efficient Fine-Tuning for Pre-trained Natural Language Models May 24, 2022
Python 5 Code and data for NAACL 2021 paper "On Transferability of Bias Mitigation Effects in Language … Aug 19, 2022
Python 20 The code of '3D-Aware Semantic-Guided Generative Model for Human Synthesis' (ECCV 2022) Aug 03, 2022
Python 56 Accompanying code for our *SEM 2018 @ NAACL 2018 paper "Mixing Context Granularities for Improved … Mar 28, 2022
Python 13 Virtual Data Augmentation: A Robust and General Framework for Fine-tuning Pre-trained Models Aug 06, 2022
Python 40 use google pre-training model bert to fine-tuning for the chinese multiclass classification Aug 26, 2022
Jupyter Notebook 58 KDD19 Tutorial: From Shallow to Deep Language Representations: Pre-training, Fine-tuning, and Beyond Mar 14, 2022
Python 5 Code for the paper: "Entity Linking and Filling for Question Answering over Knowledge Graphs" May 10, 2022
Python 9 Implementation of the Paper "Entity Linking in Web Tables with Multiple Linked Knowledge Bases" Jan 05, 2022
Jupyter Notebook 2 Easily customizable implementation of Transfer Learning with Fine-Tuning using Keras pre-trained CNN models. Apr 21, 2023
Python 26 An Implementation of ERNIE For Language Understanding (including Pre-training models and Fine-tuning tools) Oct 18, 2022
Python 7 Recipes from fine-tuning a pre-trained wav2vec 2.0 model using the espresso tool kit May 16, 2023
Python 8 This is the source code for: Context-aware Entity Typing in Knowledge Graphs. Jul 03, 2022
Jsonnet 18 Code for the paper "Inoculation by Fine-Tuning: A Method for Analyzing Challenge Datasets", to be … Apr 10, 2022
None 22 BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks May 29, 2023
Jupyter Notebook 365 End-to-End recipes for pre-training and fine-tuning BERT using Azure Machine Learning Service Aug 05, 2022
Python 3 End-to-End recipes for pre-training and fine-tuning BERT using Azure Machine Learning Service Mar 21, 2022
HTML 8 Undergraduate graduation project (Entity Linking System in Web Tables with Multiple Linked Knowledge Bases) at … Mar 03, 2022
None 3 Code for the paper On the Interplay Between Fine-tuning and Sentence-Level Probing forLinguistic Knowledge in … Oct 31, 2022
None 42 Official code of Training and Tuning Generative Neural Radiance Fields for Attribute-Conditional 3D-Aware Face Generation Oct 15, 2022
Python 12 A unified framework for Low-resource Audio Processing and Evaluation (SSL Pre-training and Downstream Fine-tuning) Jun 27, 2023