|
|
Perl |
5 |
Nucleotide diversity estimation using population SNP data |
Aug 24, 2021 |
|
|
Jupyter Notebook |
9 |
PlantCV image analysis scripts used in the PlantCV v2.0 paper |
Mar 10, 2022 |
|
|
Jupyter Notebook |
9 |
Scripts for analyses and figures for SNP STR Imputation manuscript |
May 06, 2022 |
|
|
Shell |
3 |
Scripts for Population Genetic Analysis of any genotype data |
Aug 11, 2022 |
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|
C++ |
20 |
Population genetics analyses from NGS data |
Dec 20, 2022 |
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|
Python |
5 |
Basic filtering scripts for various mutation calling tools |
Oct 29, 2020 |
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|
None |
5 |
SNP and variant calling pipeline for bacteria |
Feb 02, 2023 |
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|
R |
3 |
KIR gene content imputation from SNP data in the Finnish population |
Jan 18, 2023 |
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|
Python |
8 |
Analysis of large inversions using SNP data |
Jan 30, 2023 |
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|
R |
3 |
Miscellaneous data analyses, scripts, notes |
Jun 02, 2020 |
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|
C++ |
2 |
Programs for performing various population genetic analyses |
Aug 22, 2022 |
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|
JavaScript |
30 |
The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data |
Jul 01, 2021 |
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|
R |
2 |
Wrapper and analysis scripts for RNA variant calling pipeline |
Nov 19, 2023 |
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|
R |
2 |
Examples of R scripts for basic data analyses |
May 12, 2020 |
|
|
None |
2 |
Core scripts of data analysis pipeline for "The value of genotype-specific reference for transcriptome analyses". |
Jun 16, 2022 |
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|
R |
2 |
Filtering and analysis of MIP data |
Mar 04, 2021 |
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|
Python |
11 |
A NGS data analysis pipeline with emphasis on SNP detection |
Mar 08, 2023 |
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|
R |
4 |
An R package for epidemiological analysis using population data |
Mar 01, 2022 |
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|
C++ |
2 |
Multistate population projection model for demographic estimation. |
Apr 28, 2024 |
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|
HTML |
9 |
A smorgasbord of R functions for population genomic analyses |
Jan 15, 2023 |
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|
Julia |
39 |
Compressed storage for SNP data |
Apr 14, 2022 |
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|
R |
4 |
Bayesian estimation of the population size parameter theta from genomic data |
Sep 01, 2020 |
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|
Ruby |
6 |
A framework for organizing scripts |
Jul 18, 2022 |
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|
R |
16 |
Tidy Analysis Tools for Mortality, Fertility, Migration and Population Data |
Nov 05, 2020 |
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|
R |
5 |
Automated Pipeline for Variant/Haplotype Calling and Filtering |
May 13, 2023 |
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|
Jupyter Notebook |
2 |
Python (numpy/scipy/pandas/matplotlib) based Visualization tool for population structure data as generated with Illumina SNP chips. |
Oct 17, 2021 |
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|
R |
5 |
An R package for creating and manipulating population graph objects useful for spatial landscape and … |
Oct 18, 2022 |
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|
MATLAB |
4 |
Multi-population harmony search algorithm for the detection of high-order SNP interactions |
Apr 11, 2022 |
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|
Python |
3 |
Scripts for bio-data analysis |
Mar 17, 2020 |
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|
R |
3 |
Data analysis scripts for MoodBar |
Apr 06, 2014 |
|
|
Python |
2 |
Materials for the course "Bioinformatic Pipelines for Population Genomic data analysis" |
May 29, 2023 |
|
|
Jupyter Notebook |
2 |
PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis |
Jul 11, 2023 |
|
|
C++ |
2 |
Cross-population analysis using the individual-level GWAS data |
Mar 01, 2023 |
|
|
R |
2 |
Compilation of scripts used for analysis of the Kafue National Park baboon population |
Feb 11, 2021 |
|
|
TeX |
2 |
Programs for the (pre-NGS-era) analysis of population-genetic data. |
Feb 22, 2018 |
|
|
C++ |
24 |
A program for the Maximum-likelihood analysis of population genomic data. |
Sep 16, 2022 |
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|
R |
17 |
An R package for the spatial analysis of population genetic data. |
Oct 18, 2022 |
|
|
Python |
7 |
Helper scripts for CivicTechTO organizing tasks |
Feb 22, 2022 |
|
|
None |
4 |
Course materials for the OHDSI population-level estimation tutorial |
Mar 02, 2021 |
|
|
IGOR Pro |
2 |
Sr data analysis scripts |
Aug 10, 2018 |
|
|
R |
147 |
R package for the analysis of massive SNP arrays. |
Apr 05, 2023 |
|
|
SAS |
83 |
Delivery standard industry analyses, built upon CDISC standards for analysis data |
Aug 04, 2022 |
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|
R |
2 |
Analysis code for CMAP analyses of U.S. Census data in 2021 |
Jan 28, 2021 |
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|
R |
8 |
R tools for performing ageing focussed analyses using matrix population models. |
Mar 30, 2023 |
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|
Shell |
11 |
Data and scripts used in the oneKP capstone analyses |
Apr 05, 2022 |
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|
Python |
3 |
Various scripts for sequencing data analysis |
Jan 03, 2023 |
|
|
Shell |
2 |
Scripts for neMeRIP-seq data analysis |
Jul 15, 2022 |
|
|
Python |
18 |
Collection of Python scripts for parsing/analyses of RAD-seq data |
Dec 08, 2022 |
|
|
Python |
11 |
Analysis pipeline for quick ML analyses. |
Mar 05, 2023 |
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|
Scheme |
13 |
Static Analysis Framework for Modular Analyses |
Apr 03, 2023 |