Stars
6
Forks
2
Language
Nextflow
Last Updated
Dec 11, 2023
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Nextflow | 2 | SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae. | Oct 25, 2023 | |
| HTML | 2 | Nextflow pipeline for quality controls and trimming of raw sequencing data | Mar 21, 2023 | |
| Nextflow | 4 | Nextflow pipeline for preprocessing RNA sequencing data. | Nov 22, 2022 | |
| Python | 8 | bisulfite sequencing pipeline from fastq to methylation reports | Jun 21, 2022 | |
| Shell | 2 | PAPline is an archaeogenetic pipeline that aims to facilitate the processing of raw sequencing reads, … | May 14, 2022 | |
| Nextflow | 9 | A nextflow pipeline for decontamination of short reads, long reads and contigs | May 30, 2022 | |
| Python | 8 | Simplifies parallel processing of DNA sequencing reads | Apr 01, 2022 | |
| HTML | 74 | Nextflow pipeline for analysis of direct RNA Nanopore reads | May 10, 2022 | |
| Nextflow | 3 | Nextflow pipeline for the analysis of metagenomic short reads. | Apr 28, 2023 | |
| HTML | 2 | Raw reads mOTUs and taxonomic classification pipeline | Jul 20, 2023 | |
| R | 2 | Data Processing Pipeline for PRISM Sequencing | Nov 28, 2023 | |
| Python | 2 | A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina … | Sep 01, 2021 | |
| Python | 13 | single-nucleus nanopore reads processing pipeline | Jun 27, 2022 | |
| Nextflow | 8 | Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager. | Feb 21, 2022 | |
| Nextflow | 3 | A Nextflow pipeline to analyze NGS data in fastq format from bacterial genome | Sep 28, 2023 | |
| Nextflow | 2 | A simple pipeline for pre-processing Illumina FASTQ files. | Jan 10, 2021 | |
| Nextflow | 2 | WORK IN PROGRESS: Nextflow pipeline to run bcl2fastq to convert BCL files to FASTQ | Jul 05, 2021 | |
| Groovy | 24 | A Nextflow pipeline to identify quality control issues with new sequencing data. | Apr 05, 2023 | |
| Python | 3 | Data processing pipeline for HIV next-gen sequencing | Jul 03, 2021 | |
| Nextflow | 4 | A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq) | May 03, 2022 | |
| Perl | 14 | Pipeline of tools to process raw fastq data and produce meaningful genomic data | Jun 10, 2022 | |
| Groovy | 58 | Pipeline to fetch metadata and raw FastQ files from public and private databases | Aug 15, 2022 | |
| Python | 8 | Pipeline for the processing of 3' end sequencing libraries | Dec 17, 2021 | |
| Python | 9 | abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format … | Feb 21, 2021 | |
| Python | 4 | Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … | Apr 06, 2023 | |
| Python | 2 | Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data | Jun 29, 2023 | |
| C++ | 4 | Image processing pipeline for cameras that provide RAW data | May 16, 2023 | |
| Nextflow | 4 | Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells) | Mar 16, 2023 | |
| Python | 2 | ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and … | Apr 12, 2022 | |
| None | 16 | MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz … | Feb 28, 2023 | |
| Nextflow | 6 | This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of … | Apr 08, 2023 | |
| Python | 3 | SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and … | Dec 08, 2021 | |
| Nextflow | 3 | UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads | Aug 25, 2021 | |
| Python | 2 | Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics | Dec 15, 2023 | |
| Perl | 6 | Nextflow pipeline to scan high throughput sequencing data for circRNAs, perform differential expression and generate … | Apr 13, 2021 | |
| Nextflow | 3 | Nextflow pipeline for CNest | Mar 31, 2022 | |
| Nextflow | 4 | None | Jan 12, 2022 | |
| Nextflow | 4 | MTBSeq made simple and easy using Nextflow. | Apr 09, 2022 | |
| Nextflow | 4 | *de novo* orthologous gene predictions from bam + bed or fasta/fastq data | Jul 22, 2021 | |
| Nextflow | 4 | Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice) | Mar 02, 2022 | |
| Nextflow | 4 | The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository | Mar 02, 2020 | |
| Nextflow | 4 | A simple fastp-MultiQC nextflow pipeline | Jul 13, 2022 | |
| Nextflow | 4 | An SARS-CoV-2 bioinformatics pipeline for CLIA validation using Dr. Erin Young's Cecret StaphB pipeline as … | Jan 20, 2022 | |
| Nextflow | 4 | A proof of concept RNA-Seq pipeline with Nextflow | Dec 20, 2018 | |
| Nextflow | 4 | Workflow leveraging the scanpy-scripts package to run Scanpy in a Nextflow workflow | Dec 03, 2020 | |
| Nextflow | 4 | Quantification component for droplet-based studies | Nov 17, 2021 | |
| Nextflow | 4 | None | Jul 20, 2022 | |
| Nextflow | 4 | Nextflow training material for FAANG workshop February 2020 | Apr 29, 2021 | |
| Nextflow | 4 | Nextflow pipeline for BWA, BWA2 and STAR alignments | May 07, 2022 | |
| Nextflow | 4 | Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, … | Jul 18, 2022 |