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Python |
6 |
NGS pipelines |
Feb 02, 2022 |
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Nextflow |
7 |
The set of NGS processing pipelines used at Babraham |
Feb 07, 2022 |
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Nextflow |
7 |
The set of NGS processing pipelines used at Babraham |
Dec 19, 2022 |
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|
R |
2 |
A set of snakemake pipelines for doing RNA editing |
Jun 12, 2023 |
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Python |
3 |
Some NGS workflow created by snakemake |
Apr 21, 2023 |
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Shell |
2 |
NGS pipelines for rice |
Aug 13, 2021 |
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wdl |
41 |
viral-ngs: complete pipelines |
Jul 11, 2022 |
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Shell |
2 |
NGS-pipelines by Pete |
Dec 06, 2019 |
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Shell |
22 |
Pipelines for NGS, imputation, gwas, ... |
Feb 16, 2022 |
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|
Python |
41 |
Collection of CGAT NGS Pipelines |
Mar 03, 2023 |
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|
C |
2 |
a collection of snakemake pipelines |
Apr 29, 2022 |
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|
Python |
23 |
SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines. |
Mar 13, 2023 |
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Python |
2 |
Genomic Pipelines (Mapping + Variant Calling) from NGS Data |
Mar 08, 2021 |
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Python |
15 |
HemTools: a collection of NGS pipelines and bioinformatic analyses |
Aug 10, 2022 |
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|
Python |
97 |
NGS-pipe: next-generation sequencing pipelines for precision oncology |
Oct 11, 2022 |
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Perl |
2 |
Collection of pipelines for NGS analysis along with utilities |
Apr 26, 2023 |
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|
Python |
319 |
Customizable workflows based on snakemake and python for the analysis of NGS data |
Apr 05, 2023 |
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Python |
2 |
Scripts and snakemake pipelines associated with the Spok Block paper |
Jun 06, 2022 |
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Perl |
18 |
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform … |
Nov 02, 2022 |
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Python |
19 |
Pipelines for NGS data preprocessing by the Bock lab and friends |
Nov 03, 2022 |
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Jupyter Notebook |
3 |
Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison. |
Dec 21, 2022 |
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Python |
10 |
Snakemake template for building reusable and scalable machine learning pipelines with mikropml |
Feb 09, 2023 |
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Python |
3 |
Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq |
Nov 01, 2022 |
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Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |
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Vim script |
2 |
Snakemake Vim definitions, copied from https://bitbucket.org/snakemake/snakemake/ |
Oct 26, 2020 |
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R |
2 |
A collection of snakemake pipelines to analyze various data types. This is under active development. |
Jan 31, 2023 |
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Python |
7 |
A set of processes/pipelines for bioinformatics |
Jun 30, 2022 |
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R |
4 |
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered … |
Apr 07, 2023 |
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Shell |
10 |
@ngs environment |
Jan 10, 2022 |
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Perl |
8 |
NGS pipeline |
Jan 25, 2023 |
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HTML |
14 |
NGS Tutorial |
Feb 01, 2023 |
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Python |
6 |
viral-ngs |
Jan 28, 2023 |
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HTML |
2 |
Snakemake homepage |
Mar 23, 2022 |
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HTML |
4 |
Snakemake workshop |
Apr 18, 2023 |
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Python |
10 |
Snakemake + BIDS |
Mar 31, 2023 |
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Java |
2 |
A set of module for multiple NLP pipelines |
May 09, 2022 |
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Python |
9 |
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, … |
May 27, 2023 |
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C++ |
4 |
NGS Language Bindings |
Jun 07, 2022 |
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Python |
2 |
Tasty, tasty, NGS! |
Mar 31, 2023 |
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Shell |
14 |
PharmGKB NGS Pipeline |
Apr 21, 2022 |
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None |
88 |
Pathogen NGS Documentary |
Aug 15, 2022 |
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C++ |
115 |
NGS Language Bindings |
Aug 10, 2022 |
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Go |
16 |
NGS duplicate marking |
May 09, 2023 |
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Perl |
10 |
NGS perl modules |
Apr 29, 2023 |
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None |
4 |
NGS Scripts Dumpster |
Nov 28, 2022 |
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Shell |
2 |
Olink-NGS work |
Apr 04, 2024 |
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|
Shell |
5 |
Snakemake + Singularity + SLURM |
Feb 10, 2022 |
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|
Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
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|
Python |
2 |
Snakemake Benchmark Analysis |
Apr 28, 2022 |
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|
Python |
2 |
Tutorial on snakemake |
Sep 29, 2022 |