|
C++ |
29 |
Genomes on the Cloud, Mapping & Variant Calling Pipelines |
Jul 29, 2022 |
|
Python |
2 |
Snakemake pipeline for read mapping and variant calling |
Sep 08, 2022 |
|
Python |
6 |
NGS pipelines |
Feb 02, 2022 |
|
Perl |
8 |
The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data … |
Jan 12, 2023 |
|
Python |
2 |
Genomic variant combiner |
Oct 15, 2020 |
|
C# |
116 |
Canvas - Copy number variant (CNV) calling from DNA sequencing data |
Apr 19, 2023 |
|
C |
149 |
Microassembly based somatic variant caller for NGS data |
Aug 11, 2022 |
|
Python |
47 |
Ultra-efficient taxonomic mapping of NGS data |
Apr 25, 2022 |
|
Shell |
11 |
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC |
Apr 06, 2022 |
|
None |
2 |
Variant-Calling-Example |
Apr 20, 2023 |
|
JavaScript |
7 |
Genomic variant analysis platform |
Aug 09, 2022 |
|
Python |
2 |
genomic variant frequency estimation |
May 03, 2023 |
|
Shell |
2 |
NGS pipelines for rice |
Aug 13, 2021 |
|
wdl |
41 |
viral-ngs: complete pipelines |
Jul 11, 2022 |
|
Shell |
2 |
NGS-pipelines by Pete |
Dec 06, 2019 |
|
Python |
60 |
Variant calling tool for long-read sequencing data |
May 02, 2023 |
|
R |
233 |
Quick mining and visualization of NGS data by integrating genomic databases |
May 29, 2023 |
|
Shell |
4 |
H3A variant calling pipeline |
Apr 20, 2021 |
|
Cython |
8 |
TIDDIT - structural variant calling |
Jun 03, 2022 |
|
Python |
2 |
variant calling and processing |
Apr 27, 2022 |
|
Cython |
52 |
TIDDIT - structural variant calling |
Mar 26, 2023 |
|
R |
6 |
Tumor-only variant calling |
May 17, 2023 |
|
Shell |
22 |
Pipelines for NGS, imputation, gwas, ... |
Feb 16, 2022 |
|
Python |
41 |
Collection of CGAT NGS Pipelines |
Mar 03, 2023 |
|
Python |
29 |
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling |
Feb 15, 2023 |
|
Python |
102 |
Accurate and flexible loops calling tool for 3D genomic data. |
Nov 26, 2022 |
|
C |
12 |
A complete suite of tools to work with genomic variation data, from VCF tools to … |
Nov 30, 2021 |
|
TeX |
2 |
Demographic inferences from NGS data |
Apr 14, 2022 |
|
Python |
18 |
commandline manipulation of genomic variants and NGS reads |
Jan 20, 2023 |
|
None |
4 |
A collection of genomic variant databases |
Nov 06, 2020 |
|
Jupyter Notebook |
4 |
A bioinformatic variant calling pipeline |
Aug 24, 2017 |
|
Nextflow |
9 |
gatk4 RNA variant calling pipeline |
Aug 02, 2022 |
|
HTML |
5 |
Nextflow Tutorial - Variant Calling Edition |
Jul 18, 2022 |
|
Python |
46 |
Benchmarking toolkit for variant calling |
Mar 08, 2023 |
|
Shell |
2 |
Variant calling and PSMC workflows |
Oct 22, 2023 |
|
JavaScript |
2 |
Variant is an ambitious project aimed to provide a complete suite of tools to work … |
Jul 12, 2015 |
|
Python |
19 |
Pipelines for NGS data preprocessing by the Bock lab and friends |
Nov 03, 2022 |
|
Python |
7 |
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data |
Aug 24, 2021 |
|
Python |
5 |
RNA editing discovery from NGS data. |
Jun 19, 2019 |
|
C++ |
3 |
Inferring admixture proportions from NGS data |
Jun 06, 2022 |
|
C++ |
20 |
Population genetics analyses from NGS data |
Dec 20, 2022 |
|
C++ |
47 |
RUFUS k-mer based genomic variant detection |
May 26, 2023 |
|
Nextflow |
11 |
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and … |
Jun 23, 2022 |
|
Jupyter Notebook |
114 |
Sequana: a set of Snakemake NGS pipelines |
Jul 29, 2022 |
|
Python |
2 |
Pipelines to turn basic genomic data into Ensembl cores and back |
Jan 31, 2023 |
|
Python |
2 |
Materials for the course "Bioinformatic Pipelines for Population Genomic data analysis" |
May 29, 2023 |
|
Nextflow |
7 |
Small variant calling for human samples |
Jul 30, 2022 |
|
C |
10 |
TOPMed Freeze 3 variant calling pipeline |
Nov 24, 2021 |
|
None |
2 |
Consensus assembly and variant calling workflow |
Aug 17, 2017 |
|
Groovy |
2 |
Small variant calling for haploid samples |
Apr 25, 2022 |