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None |
2 |
Single cell analysis of the JUMP Cell Painting consortium data |
Apr 11, 2023 |
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|
R |
4 |
A bioinformatics tool for analyzing the heterogeneity of single-cell populations |
Jul 22, 2022 |
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|
Python |
2 |
Container class for single-cell experiments |
Feb 12, 2024 |
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|
Jupyter Notebook |
44 |
Material for lecture at the EMBL Single Cell Course 2016 |
Sep 19, 2022 |
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|
HTML |
15 |
Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis |
Feb 10, 2023 |
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|
R |
11 |
Single-Cell Inference of Class Switch Recombination |
Dec 17, 2023 |
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|
Jupyter Notebook |
83 |
Course material in notebook format for learning about single cell bioinformatics methods |
Jun 27, 2022 |
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|
R |
8 |
Single cell transcriptomic data from Tasic, et al. (2016) |
May 02, 2022 |
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|
Python |
2 |
Single cell 3D genome modeling tools developed in the Bioinformatics and Machine Learning Lab |
Jan 24, 2024 |
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|
Jupyter Notebook |
105 |
Images and other data from the JUMP Cell Painting Consortium |
May 08, 2023 |
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|
Jupyter Notebook |
2 |
Images and other data from the JUMP Cell Painting Consortium |
Jul 18, 2023 |
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|
Jupyter Notebook |
4 |
Single cell ATAC-Seq preprocessing for single cell explorer |
May 29, 2021 |
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Python |
2 |
A single box for your medicine |
May 02, 2023 |
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|
Shell |
84 |
Robs manual for the computational genomics and bioinformatics class. |
Aug 14, 2022 |
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|
Python |
40 |
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis |
Apr 24, 2023 |
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|
Jupyter Notebook |
4 |
Final project for the Algorithms for Bioinformatics class at UNIPD |
Feb 16, 2021 |
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R |
5 |
Identify cell type based on cell markers for single cell squencing |
Apr 19, 2022 |
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Python |
12 |
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model |
Mar 24, 2023 |
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|
JavaScript |
107 |
Single cell analysis in the browser |
Apr 26, 2023 |
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Python |
25 |
Algorithms for single-cell analysis |
Oct 21, 2022 |
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R |
47 |
Toolkit for Single-Cell Velocity |
Apr 27, 2023 |
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None |
2 |
Teaching material for the single-cell course 2022 |
May 02, 2023 |
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|
Jupyter Notebook |
9 |
The million-scale method for single-cell analysis |
Aug 02, 2022 |
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Perl |
4 |
Hidden Markov Model project for bioinformatics class |
Aug 13, 2019 |
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None |
5 |
A repository for the 2016 GitHub for Everyone Class |
Sep 04, 2021 |
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R |
39 |
Algorithm for the inference of cell types from single-cell RNA-seq data. |
Feb 15, 2023 |
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Python |
29 |
Interactive software tool for the assignment of cell types in single-cell studies. |
Dec 12, 2022 |
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None |
2 |
Single-cell sequencing of the proliferative endometrium |
May 20, 2021 |
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R |
60 |
Assessing the purity of single cell population |
Apr 27, 2023 |
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R |
6 |
Mixture Models for Single Cell Assays |
Nov 09, 2020 |
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R |
1535 |
R toolkit for single cell genomics |
Aug 19, 2022 |
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|
Dockerfile |
2 |
An environment for single-cell RNAseq |
Feb 13, 2023 |
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|
R |
3 |
Temporarily designed for single-cell learning |
Apr 15, 2023 |
|
|
Python |
68 |
Tools for single-cell data processing |
Aug 12, 2022 |
|
|
Jupyter Notebook |
74 |
Deep Embedding for Single-cell Clustering |
Mar 26, 2022 |
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|
Jupyter Notebook |
258 |
Reference mapping for single-cell genomics |
Apr 20, 2023 |
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|
None |
8 |
Better interchange for single cell tools |
Jun 20, 2021 |
|
|
Jupyter Notebook |
4 |
Primers for single-cell data analysis |
Feb 16, 2023 |
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|
Jupyter Notebook |
3 |
single cell data analysis for rms |
Jan 31, 2023 |
|
|
R |
2 |
R toolkit for single cell genomics |
Oct 28, 2023 |
|
|
R |
7 |
Functional Annotation for Single-Cell Transcriptomics |
Feb 21, 2024 |
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|
Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
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|
R |
18 |
Shiny app for the analysis of single cell data |
Apr 18, 2023 |
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|
JavaScript |
9 |
Repository for NYU JTerm class 2016 |
Jan 28, 2019 |
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|
Java |
2 |
Solution for the TTC 2016 Class Responsibility Assignment case |
Nov 02, 2016 |
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|
Jupyter Notebook |
3 |
Teaching the fundamentals of bioinformatics and data science. BD2K Summer Workshop 2016 |
May 26, 2020 |
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|
Python |
22 |
Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series. |
May 09, 2022 |
|
|
Python |
96 |
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural … |
May 09, 2023 |
|
|
Mathematica |
2 |
Class repository for Parsons MFADT Fall 2016 class "Building Worlds" |
Sep 29, 2019 |
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|
Dockerfile |
4 |
Hosting the container for the extended single-cell best-practices book |
Mar 13, 2022 |