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R |
1535 |
R toolkit for single cell genomics |
Aug 19, 2022 |
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R |
2 |
R toolkit for single cell genomics |
Oct 28, 2023 |
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Python |
25 |
Spatial Single-Cell Analysis Toolkit |
Jun 29, 2022 |
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Jupyter Notebook |
4 |
UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference |
May 03, 2022 |
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Python |
9 |
Toolkit for single-cell DNA methylation analysis. |
Aug 09, 2022 |
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R |
12 |
Toolkit for single-cell copy number analysis |
Apr 05, 2023 |
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R |
213 |
A toolkit for single-cell immune profiling |
Apr 21, 2023 |
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Common Workflow Language |
4 |
CWL toolkit for single-cell sequencing data analysis |
Jan 22, 2023 |
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R |
441 |
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data |
May 10, 2023 |
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R |
2 |
A toolkit for validating single-cell analysis with visualization. |
May 25, 2022 |
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Python |
16 |
Spatial analysis toolkit for single cell multiplexed tissue data |
Jul 29, 2022 |
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Python |
4 |
a python toolkit for single-cell tumor phylogenetic analysis |
Nov 06, 2022 |
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Python |
22 |
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation: |
Apr 12, 2024 |
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Python |
4 |
Single-cell Graph-based Regulatory Element Analysis Toolkit |
Feb 19, 2023 |
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R |
180 |
R toolkit for the analysis of single-cell chromatin data |
Aug 05, 2022 |
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R |
3 |
R toolkit for the analysis of single-cell functional heterogeneity |
Apr 12, 2023 |
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Jupyter Notebook |
4 |
Single cell ATAC-Seq preprocessing for single cell explorer |
May 29, 2021 |
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R |
8 |
The CanceR Single Cell ExpressioN Toolkit one-line-command applications. |
Jan 25, 2022 |
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Python |
21 |
Automated Cell Toolkit |
Jan 05, 2023 |
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Jupyter Notebook |
9 |
Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics … |
Dec 23, 2021 |
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R |
19 |
Estimation of Single-Cell Potency with Single Cell Entropy |
May 18, 2023 |
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Python |
40 |
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis |
Apr 24, 2023 |
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R |
4 |
Single Cell Pipeline |
Aug 19, 2022 |
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Jupyter Notebook |
9 |
Single cell pipelines |
Jun 23, 2022 |
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MATLAB |
10 |
Single Cell Segmentation |
Nov 04, 2021 |
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Python |
37 |
Single Cell Transcriptomics |
Mar 27, 2023 |
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JavaScript |
2 |
Single Cell Navigator |
Aug 19, 2022 |
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R |
2 |
Single cell codes |
May 11, 2023 |
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R |
5 |
Identify cell type based on cell markers for single cell squencing |
Apr 19, 2022 |
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Python |
25 |
Algorithms for single-cell analysis |
Oct 21, 2022 |
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R |
4 |
A Comprehensive Toolkit to Analyze Multi-Sample Multi-Condition Single-Cell Transcriptomics Data |
Sep 12, 2022 |
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R |
64 |
Cell type prioritization in single-cell data |
Apr 18, 2023 |
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HTML |
9 |
Build predicted cell-cell interaction networks from single-cell data. |
Dec 14, 2022 |
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R |
41 |
Inference of cell-cell communication from single-cell RNAseq data |
Apr 06, 2023 |
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Swift |
2 |
Super powerful toolkit to improve engineer velocity. |
Mar 04, 2023 |
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R |
2 |
Single Cell Analysis Operations |
Aug 12, 2022 |
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Python |
2 |
Single Cell Predictive Marker |
Aug 18, 2022 |
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Python |
43 |
Single Cell Analysis Pipelines |
Aug 09, 2022 |
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R |
66 |
Single Cell Cluster Evaluation |
Oct 07, 2022 |
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Jupyter Notebook |
129 |
Single cell trajectory detection |
Apr 05, 2023 |
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HTML |
5 |
single-cell scanpy teaching |
Mar 09, 2022 |
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Python |
191 |
Single cell perturbation prediction |
Apr 19, 2023 |
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Python |
2 |
Single-cell Iso Prep |
Sep 26, 2022 |
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Python |
8 |
Single cell somatic genotyper |
Sep 28, 2022 |
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Rust |
136 |
Single-Cell Genotyping Tool |
Apr 12, 2023 |
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Python |
2 |
Single cell epigenome modeling |
Mar 01, 2023 |
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R |
20 |
Single-cell Orientation Tracing |
Apr 20, 2022 |
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Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |
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Brainfuck |
8 |
Single-cell Phylogeny Reconstruction |
Dec 24, 2022 |
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Jupyter Notebook |
45 |
spatial transcriptome, single cell |
May 03, 2023 |