|
|
Cython |
52 |
TIDDIT - structural variant calling |
Mar 26, 2023 |
|
|
Python |
29 |
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling |
Feb 15, 2023 |
|
|
Python |
71 |
pbsv - PacBio structural variant (SV) calling and analysis tools |
Jul 14, 2022 |
|
|
Go |
188 |
structural variant calling and genotyping with existing tools, but, smoothly. |
Apr 12, 2023 |
|
|
Nextflow |
2 |
Germline structural variant calling pipeline for short read WGS datasets |
Jul 13, 2023 |
|
|
Python |
13 |
Structural variant pipeline |
Feb 04, 2022 |
|
|
C++ |
15 |
Structural variant annotation |
Apr 05, 2023 |
|
|
Python |
52 |
Structural variant caller |
Sep 12, 2022 |
|
|
C |
60 |
Structural Variant Index |
Feb 28, 2023 |
|
|
HTML |
29 |
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses |
May 06, 2022 |
|
|
None |
2 |
Variant-Calling-Example |
Apr 20, 2023 |
|
|
JavaScript |
6 |
suave: structural variant explorer |
Apr 28, 2022 |
|
|
Python |
20 |
structural variant database software |
May 31, 2022 |
|
|
Python |
2 |
structural variant database software |
Feb 05, 2021 |
|
|
Shell |
4 |
H3A variant calling pipeline |
Apr 20, 2021 |
|
|
Python |
2 |
variant calling and processing |
Apr 27, 2022 |
|
|
R |
6 |
Tumor-only variant calling |
May 17, 2023 |
|
|
Python |
21 |
Structural variant (SV) analysis tools |
Jun 16, 2022 |
|
|
Python |
166 |
Structural variant toolkit for VCFs |
Aug 02, 2022 |
|
|
Python |
11 |
Color Genomics Structural Variant Simulator |
Sep 06, 2022 |
|
|
Python |
25 |
Stupid Simple Structural Variant View |
Mar 30, 2021 |
|
|
Jupyter Notebook |
4 |
A bioinformatic variant calling pipeline |
Aug 24, 2017 |
|
|
Nextflow |
9 |
gatk4 RNA variant calling pipeline |
Aug 02, 2022 |
|
|
HTML |
5 |
Nextflow Tutorial - Variant Calling Edition |
Jul 18, 2022 |
|
|
Python |
46 |
Benchmarking toolkit for variant calling |
Mar 08, 2023 |
|
|
Shell |
2 |
Variant calling and PSMC workflows |
Oct 22, 2023 |
|
|
Jupyter Notebook |
27 |
Deep learning-based structural variant caller |
Aug 08, 2022 |
|
|
R |
36 |
Comprehensive benchmark of structural variant callers |
Nov 27, 2022 |
|
|
Nextflow |
7 |
Small variant calling for human samples |
Jul 30, 2022 |
|
|
C |
10 |
TOPMed Freeze 3 variant calling pipeline |
Nov 24, 2021 |
|
|
None |
2 |
Consensus assembly and variant calling workflow |
Aug 17, 2017 |
|
|
Groovy |
2 |
Small variant calling for haploid samples |
Apr 25, 2022 |
|
|
None |
15 |
Minor Variant Calling and Phasing Tools |
Jul 31, 2022 |
|
|
Shell |
20 |
Variant Calling Pipeline in Cromwell/WDL |
Nov 13, 2020 |
|
|
C++ |
21 |
Interface to various variant calling formats. |
Apr 19, 2022 |
|
|
None |
12 |
Consensus assembly and variant calling workflow. |
Oct 27, 2022 |
|
|
Cython |
3 |
Python wrapper to the PPL library |
Sep 18, 2022 |
|
|
Cython |
4 |
pyimgui: Generate public interfaces from .pyx source files |
Jul 17, 2022 |
|
|
Cython |
4 |
CyDifflib is a fast implementation of difflib's algorithms, which can be used as a drop-in … |
Aug 07, 2022 |
|
|
Cython |
4 |
A low-level execution library for analytic data processing. |
Aug 09, 2022 |
|
|
Cython |
5 |
A Cython port of Flatbush for fast, static 2D spatial indexing |
Jun 15, 2022 |
|
|
Cython |
5 |
Python object-oriented bindings for Ladislav Zezula's CASCLib (https://github.com/ladislav-zezula/CascLib) |
Jun 02, 2022 |
|
|
Cython |
5 |
Wrapper for the macOS signpost API |
Aug 03, 2022 |
|
|
Cython |
5 |
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit |
Aug 22, 2022 |
|
|
Cython |
6 |
Encompile Cython New By Tumbal Termux |
May 31, 2022 |
|
|
Cython |
6 |
Asynchronous data loader for Kivy using libcurl and SDL2 |
Jun 06, 2022 |
|
|
Cython |
6 |
Python bindings for libgbinder |
Jul 06, 2022 |
|
|
Cython |
6 |
Python bindings to libpurple |
Aug 06, 2022 |
|
|
Cython |
6 |
Pyslvs core module. |
Jan 01, 2022 |
|
|
Cython |
6 |
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence … |
Jul 23, 2022 |