Stars
6
Forks
7
Language
Shell
Last Updated
Apr 08, 2024
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
Jupyter Notebook | 4 | A bioinformatic variant calling pipeline | Aug 24, 2017 | |
Nextflow | 9 | gatk4 RNA variant calling pipeline | Aug 02, 2022 | |
C | 10 | TOPMed Freeze 3 variant calling pipeline | Nov 24, 2021 | |
Shell | 20 | Variant Calling Pipeline in Cromwell/WDL | Nov 13, 2020 | |
None | 5 | SNP and variant calling pipeline for bacteria | Feb 02, 2023 | |
Python | 3 | Snakemake pipeline for variant calling using GATK | Mar 02, 2023 | |
Python | 5 | Andersen Lab Python-based pipeline for variant calling. | Jan 28, 2023 | |
Nextflow | 3 | Variant calling pipeline for the Illumina Dragen platform | Apr 17, 2023 | |
Python | 2 | Snakemake pipeline for read mapping and variant calling | Sep 08, 2022 | |
R | 5 | Automated Pipeline for Variant/Haplotype Calling and Filtering | May 13, 2023 | |
Nextflow | 12 | Nextflow pipeline for Mutect2 somatic variant calling best practices | Jul 14, 2022 | |
Scala | 3 | GATK QScripts used in our illumina variant calling pipeline. | Jul 22, 2016 | |
Jupyter Notebook | 22 | SARS-CoV-2 variant calling and consensus assembly pipeline | Apr 28, 2023 | |
Python | 3 | Multisample DNAseq variant calling pipeline for use in diagnostics | Mar 11, 2021 | |
R | 2 | Wrapper and analysis scripts for RNA variant calling pipeline | Nov 19, 2023 | |
Nextflow | 7 | Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices | Dec 11, 2021 | |
Nextflow | 2 | Germline structural variant calling pipeline for short read WGS datasets | Jul 13, 2023 | |
Shell | 2 | A shell script which implements GATK pipeline for variant calling. | Nov 29, 2023 | |
None | 2 | Variant-Calling-Example | Apr 20, 2023 | |
Nextflow | 2 | Somatic variant calling pipeline using Mutect2 adapted from GATK Best Practices | Jul 08, 2019 | |
TeX | 101 | De novo assembly based variant calling pipeline for Illumina short reads | Aug 12, 2022 | |
JavaScript | 61 | Reference-based variant calling pipeline for a pair of phased haplotype assemblies | Jul 22, 2022 | |
Groovy | 13 | A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. | Sep 15, 2022 | |
Cython | 8 | TIDDIT - structural variant calling | Jun 03, 2022 | |
Python | 2 | variant calling and processing | Apr 27, 2022 | |
Cython | 52 | TIDDIT - structural variant calling | Mar 26, 2023 | |
R | 6 | Tumor-only variant calling | May 17, 2023 | |
Python | 29 | 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling | Feb 15, 2023 | |
Python | 66 | A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads. | Apr 14, 2023 | |
HTML | 5 | Nextflow Tutorial - Variant Calling Edition | Jul 18, 2022 | |
Python | 46 | Benchmarking toolkit for variant calling | Mar 08, 2023 | |
Shell | 2 | Variant calling and PSMC workflows | Oct 22, 2023 | |
Shell | 6 | Variant Interpretation Pipeline | Mar 08, 2022 | |
Python | 13 | Structural variant pipeline | Feb 04, 2022 | |
HTML | 18 | Variant catalogue pipeline | Apr 19, 2023 | |
Shell | 11 | NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC | Apr 06, 2022 | |
Nextflow | 7 | Small variant calling for human samples | Jul 30, 2022 | |
None | 2 | Consensus assembly and variant calling workflow | Aug 17, 2017 | |
Groovy | 2 | Small variant calling for haploid samples | Apr 25, 2022 | |
None | 15 | Minor Variant Calling and Phasing Tools | Jul 31, 2022 | |
C++ | 21 | Interface to various variant calling formats. | Apr 19, 2022 | |
None | 12 | Consensus assembly and variant calling workflow. | Oct 27, 2022 | |
Python | 7 | SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data | Aug 24, 2021 | |
Perl | 3 | Scripts and updates for running the variant pipeline described in "Variant Calling From Next Generation … | Nov 08, 2020 | |
Python | 2 | The tools is used to extract PPCG defined QC metrics from Sanger variant calling pipeline … | Dec 06, 2019 | |
Scala | 3 | Tools for comparing somatic variant calling tools. | May 20, 2021 | |
Python | 2 | Validate prioritization of tumor-only variant calling | Jun 04, 2016 | |
Jupyter Notebook | 4 | Pipeline for variant annotation using Variant Effect Predictor (VEP) | Nov 30, 2023 | |
Python | 4 | Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … | Apr 06, 2023 | |
Python | 18 | Variant annotation and merging pipeline | Feb 23, 2023 |