|
|
Rust |
14 |
Compute a pairwise SNP distance matrix from one or two alignment(s) |
Mar 14, 2023 |
|
|
C |
2 |
Finds SNP sites from a multi-FASTA alignment file |
Jan 16, 2023 |
|
|
C |
180 |
Pairwise Sequence Alignment Library |
Aug 17, 2022 |
|
|
Scala |
2 |
pairwise sequence alignment in scala |
Jan 31, 2023 |
|
|
Perl |
2 |
calculates nucleotide diversity (pi) from a multiple sequence alignment fasta file |
Dec 06, 2021 |
|
|
Crystal |
2 |
convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region |
Apr 12, 2022 |
|
|
C |
7 |
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the … |
May 26, 2021 |
|
|
C++ |
5 |
FASTA/FASTQ alignment |
Jun 26, 2018 |
|
|
R |
2 |
Filtering missing data from a fasta alignment |
Jul 27, 2021 |
|
|
Python |
2 |
Couple of scripts for running modeller given a 2 sequence fasta alignment |
Sep 30, 2020 |
|
|
R |
3 |
Pairwise Alignment Breakpoint Analysis |
Feb 19, 2023 |
|
|
Makefile |
7 |
To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map |
Apr 06, 2022 |
|
|
Python |
4 |
FastA indexing and sequence retrival. |
Oct 18, 2018 |
|
|
Python |
5 |
Creates a neighbor-joining tree from a set of sequences, using maximum likelihood distances based on … |
Apr 22, 2018 |
|
|
C++ |
5 |
Multiple Sequence Alignment |
Jul 02, 2021 |
|
|
Julia |
50 |
Sequence alignment tools |
Aug 13, 2022 |
|
|
C++ |
7 |
genome sequence alignment |
Sep 09, 2022 |
|
|
Python |
2 |
coding sequence MSA（multiple sequence alignment） |
Apr 22, 2023 |
|
|
Perl |
90 |
Convert various sequence formats to FASTA |
Apr 09, 2023 |
|
|
Go |
3 |
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta … |
Feb 18, 2022 |
|
|
Rust |
4 |
Basic types and functions for pairwise alignment. |
Jan 26, 2023 |
|
|
C |
196 |
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment |
Apr 18, 2023 |
|
|
Perl |
2 |
Programs to extract homologous exons from sequence alignment |
Sep 15, 2020 |
|
|
Rust |
16 |
Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm |
Mar 17, 2023 |
|
|
C++ |
2 |
Calculates pairwise distances between gene sequences given in fasta format |
Aug 08, 2022 |
|
|
C |
5 |
Sequence Alignment Programming Interface |
Aug 07, 2022 |
|
|
Perl |
8 |
RNA Multiple Sequence Alignment |
Nov 28, 2022 |
|
|
JavaScript |
9 |
Multiple sequence alignment browser |
May 04, 2023 |
|
|
Perl |
2 |
RNA Multiple Sequence Alignment |
May 20, 2022 |
|
|
JavaScript |
18 |
Multiple sequence alignment visualizer |
Nov 17, 2022 |
|
|
Java |
11 |
SEquence ALignment evaluation suite |
Jul 02, 2019 |
|
|
TypeScript |
10 |
Visualize sequence and multiple sequence alignment (MSA) |
May 03, 2023 |
|
|
Python |
12 |
a Contig Alignment Tool for Pairwise Assembly Comparison |
Sep 09, 2022 |
|
|
Python |
2 |
Infer molecular transmission networks from pairwise distance files (part of HIV-TRACE) |
Jul 20, 2020 |
|
|
Shell |
11 |
Sequence Taxonomic Assignment by Massive Pairwise Alignments |
Mar 28, 2022 |
|
|
Rust |
58 |
A pairwise sequence aligner written in Rust |
May 03, 2023 |
|
|
Julia |
3 |
Small utility package to compute statistical observable from FASTA multiple sequence alignments. |
Apr 10, 2023 |
|
|
Python |
2 |
Numba-cuda implementatino of pairwise jaccard distance metric |
Feb 24, 2022 |
|
|
HTML |
4 |
a multiple sequence alignment tool |
Dec 21, 2021 |
|
|
TypeScript |
5 |
A multiple sequence alignment viewer |
Apr 13, 2022 |
|
|
HTML |
2 |
Multiple sequence alignment visualization component |
Sep 09, 2022 |
|
|
Python |
37 |
sequence alignment. global, local, glocal. |
Apr 19, 2023 |
|
|
C++ |
33 |
Parallel Sequence to Graph Alignment |
Apr 09, 2023 |
|
|
R |
2 |
An R script to summarise pairwise SNP differences among groups of samples. |
Sep 03, 2019 |
|
|
Python |
2 |
geocoding, distance matrix, popular_places |
Mar 19, 2021 |
|
|
PHP |
10 |
Google Distance Matrix API |
Mar 04, 2023 |
|
|
Java |
3 |
Bambino: SNP caller and Alignment Viewer for Next Gen Data |
Apr 19, 2023 |
|
|
Python |
3 |
A Grep-like tool for retrieving matching sequence records from a FASTA file. |
May 03, 2022 |
|
|
VBA |
2 |
This highly visual and responsive VB6 application is an implementation of the global sequence alignment … |
Feb 28, 2022 |
|
|
C++ |
2 |
Diamond Python bindings for sequence alignment |
Feb 15, 2023 |