better_fasta_grep

A Grep-like tool for retrieving matching sequence records from a FASTA file.

Stars

3

Forks

2

Language

Python

Last Updated

May 03, 2022

Similar Repos
Repo Language Stars Description Updated At
Go 3 A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta … Feb 18, 2022
Perl 2 calculates nucleotide diversity (pi) from a multiple sequence alignment fasta file Dec 06, 2021
Python 2 A wrapper for retrieving records from PubMed Aug 30, 2022
D 2 Dack is Ack(grep-like tool)-like tool. Aug 13, 2019
Python 2 A Galaxy tool for calculating Feature Frequency Profiles (FFP) from fasta sequence and text data. Sep 07, 2021
JavaScript 2 Removes records for files matching given regexp from LCOV file or stream Aug 20, 2015
C 92 Pairwise SNP distance matrix from a FASTA sequence alignment Apr 14, 2023
Lua 18 a grep-like tool tailored for code Mar 07, 2023
C 2 A grep-like log-searching tool Jan 09, 2023
Rust 3 Grep-Like tool build in rust Feb 24, 2023
Lua 26 nvim-telescope extension to filter file results from grep-like programs Apr 29, 2023
Python 3 Wrapper for MITOS2 annotation tool - generates a .gbk file from plain fasta sequences Apr 18, 2023
F# 11 Tool which converts json from file into F# records May 03, 2023
C++ 2 Quickly extract sequence (and quality scores) from Sequence Read Archive records Feb 14, 2023
C 3 An approximate sequence pattern matcher for FASTQ/FASTA files. Jan 28, 2023
C 30 An approximate sequence pattern matcher for FASTQ/FASTA files. Mar 11, 2023
Rust 39 A syntax-aware grep-like code search tool Aug 26, 2022
Go 2 A simple grep-like tool implemented in Go. Aug 14, 2017
Python 5 Search & Fetch records from NCBI's Sequence Read Archive. Apr 07, 2020
Julia 3 Small utility package to compute statistical observable from FASTA multiple sequence alignments. Apr 10, 2023
C++ 322 Riegeli/records is a file format for storing a sequence of string records, typically serialized protocol … Jul 28, 2022
C++ 6 a grep-like utility for testing for binary patterns in a file Jul 13, 2022
C 2 Finds SNP sites from a multi-FASTA alignment file Jan 16, 2023
PHP 103 Glob-like file and pattern matching utility. May 21, 2023
Ruby 5 Tool for retrieving main colors from the image. Sep 09, 2018
Ruby 139 Tool for retrieving main colors from the image. Dec 14, 2020
Perl 533 ack is a grep-like search tool optimized for source code. Oct 19, 2022
Python 3 A grep-like command line tool to quickly grab info from Wien2k scf files. Sep 02, 2022
Python 8 Simple grep-like function for Python. Mar 27, 2022
Rust 1634 like ~~grep~~ UBER, but for binaries Apr 24, 2023
C# 746 Graphical GREP tool for Windows May 02, 2023
C 2 A simple program to split sequences from a FASTA/FASTQ file into k-mers in the FASTA … Dec 15, 2021
Python 2 Couple of scripts for running modeller given a 2 sequence fasta alignment Sep 30, 2020
Python 6 Binary grep with support for sophisticated regexes and grep(1)-like usage Apr 08, 2022
JavaScript 79 Javascript tool for generating sequence diagrams from code Aug 25, 2022
Go 4 🔭 It's like grep but for html Jul 29, 2020
Clojure 150 :grapes: Syntax-aware grep-like for Clojure Mar 04, 2023
Go 37 TUI grep tool respect for IntelliJ Mar 31, 2023
C 129 Manual search tool to find bugs like a grep unix command - Beta Aug 27, 2022
Smalltalk 9 Tracing tool for Squeak/Smalltalk. Includes a debugger-like browser for records. Jan 28, 2022
JavaScript 3 Simple Steganography Tool for hiding and retrieving message from an image. Dec 03, 2022
Rust 3 A mini cli tool to search in a file, based on grep Feb 05, 2022
R 13 Extract Sequence from Genome According to Annotation File Apr 20, 2023
Java 13 Generate draw.io UML Sequence Diagram from text file. Apr 13, 2023
Ruby 2 The way to store records from YAML file. Aug 13, 2019
TypeScript 8 Application for matching FHIR records with clinical trial criteria Feb 25, 2022
Python 7 Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta … Jul 16, 2022
Python 3 DEPRECATED - Grep for facter fact on all nodes matching your puppetdb query Oct 19, 2018
Rust 7 VEP-like tool for sequence ontology and HGVS annotation of VCF files Apr 14, 2023
Python 7 Sequence file uploader for IRIDA Mar 10, 2023