|
|
Python |
2 |
Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements |
Aug 11, 2022 |
|
|
Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
|
|
None |
3 |
BIO326 Genome sequencing; tools and analysis |
Feb 21, 2024 |
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|
Python |
17 |
toolkit for analyzing genome editing experiments |
Feb 28, 2023 |
|
|
Shell |
87 |
Making whole bacterial genome sequencing data analysis easy |
Apr 30, 2023 |
|
|
R |
19 |
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data |
May 10, 2022 |
|
|
Nextflow |
2 |
Run CRISPResso on genome editing experiments |
Nov 19, 2021 |
|
|
Nextflow |
4 |
[WIP] Evaluate outcomes from genome editing experiments |
Jul 14, 2022 |
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|
HTML |
5 |
Analysis Framework for Biological Data from High Throughput Sequencing Experiments |
May 04, 2015 |
|
|
Python |
40 |
Rapid analysis and visualization of coronavirus genome variation |
Aug 09, 2022 |
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|
R |
14 |
Analysis pipelines for cancer genome sequencing in mice. |
Dec 20, 2022 |
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|
C++ |
4 |
Analysis software for Nanorate Sequencing (NanoSeq) experiments |
Apr 04, 2023 |
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|
None |
2 |
Rapid large-scale prokaryote pan genome analysis |
May 20, 2022 |
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|
GDScript |
2 |
sequencing data analysis |
Aug 08, 2023 |
|
|
Python |
49 |
A snakemake pipeline for SV analysis from nanopore genome sequencing |
May 15, 2023 |
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|
Python |
3 |
Imputation workflow for low coverage whole genome sequencing data |
Apr 10, 2023 |
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|
Python |
2 |
CPD sequencing data analysis |
Jul 27, 2023 |
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|
Shell |
4 |
Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria |
Jun 11, 2021 |
|
|
Jupyter Notebook |
96 |
Seismic data interpretation with deep learning |
Apr 23, 2023 |
|
|
Shell |
2 |
Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data |
Feb 18, 2022 |
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|
Python |
3 |
Various scripts for sequencing data analysis |
Jan 03, 2023 |
|
|
Java |
7 |
Analysis tool for Nanopore sequencing data |
Oct 21, 2022 |
|
|
Java |
31 |
Analysis tool for Nanopore sequencing data |
Oct 18, 2021 |
|
|
None |
2 |
Data and analysis for NA12878 genome on nanopore |
May 06, 2018 |
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|
None |
2 |
Streaming fragment assignment for real-time analysis of sequencing experiments |
Dec 04, 2023 |
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|
Python |
4 |
Config-based automated rapid prototyping framework for deep learning experiments |
Mar 13, 2023 |
|
|
Python |
4 |
tools for the processing of genome-wide bisulfite sequencing data |
Aug 07, 2018 |
|
|
R |
7 |
Visualization toolkit for SARS-CoV-2 whole genome sequencing data |
Aug 07, 2022 |
|
|
Python |
2 |
Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data |
Jun 29, 2023 |
|
|
Nextflow |
4 |
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline. |
Feb 06, 2023 |
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|
JavaScript |
2 |
Clinical DNA Sequencing Analysis and Data Warehouse |
Mar 11, 2015 |
|
|
Python |
3 |
Variant Library Annotation Tool (VaLiAnT) is an oligonucleotide library design and annotation tool for Saturation … |
Jun 20, 2022 |
|
|
Makefile |
9 |
:baby_bottle: Assemble the Genome in a Bottle sequencing data |
May 21, 2022 |
|
|
Python |
7 |
Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data |
Dec 17, 2022 |
|
|
Nextflow |
3 |
Quantify microbial abundance from whole-genome shotgun sequencing data |
Feb 15, 2023 |
|
|
HTML |
3 |
Data Analysis in Genome Biology |
Feb 10, 2020 |
|
|
C |
6 |
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments |
May 13, 2023 |
|
|
Python |
9 |
GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from … |
Aug 10, 2022 |
|
|
WDL |
3 |
Workflows for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing |
Dec 13, 2023 |
|
|
Python |
6 |
Automated analysis and result reporting for targeted sequencing data |
Oct 15, 2020 |
|
|
Python |
524 |
Tools to process and analyze deep sequencing data. |
Aug 27, 2022 |
|
|
Jupyter Notebook |
35 |
Well data processing and interpretation with ML and deep learning |
Mar 29, 2023 |
|
|
Perl |
4 |
Adaption of the original PennCNV algorithm for whole-genome sequencing data |
Sep 02, 2021 |
|
|
Shell |
4 |
MetaFX – library for feature extraction from whole-genome metagenome sequencing data |
Oct 02, 2023 |
|
|
C |
75 |
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data |
Aug 15, 2022 |
|
|
C++ |
80 |
🌈Scaffold genome sequence assemblies using linked read sequencing data |
Jul 10, 2022 |
|
|
R |
4 |
Deep Read-level Error Model for Sequencing data |
Jul 05, 2023 |
|
|
C |
71 |
Whole Genome Simulator for Next-Generation Sequencing |
Jul 21, 2022 |
|
|
Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
|
|
C++ |
19 |
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. |
Feb 10, 2023 |