Stars
7
Forks
5
Language
Python
Last Updated
Dec 17, 2022
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| R | 16 | Inferring expressed genes by whole-genome sequencing of plasma DNA | Sep 18, 2022 | |
| Shell | 87 | Making whole bacterial genome sequencing data analysis easy | Apr 30, 2023 | |
| Nextflow | 20 | Whole Exome/Whole Genome Sequencing alignment pipeline | Oct 18, 2022 | |
| Python | 2 | Clinical Whole Genome Sequencing Pipeline | May 12, 2022 | |
| Nextflow | 3 | Quantify microbial abundance from whole-genome shotgun sequencing data | Feb 15, 2023 | |
| Python | 3 | Imputation workflow for low coverage whole genome sequencing data | Apr 10, 2023 | |
| C | 75 | Genotype and phase short tandem repeats using Illumina whole-genome sequencing data | Aug 15, 2022 | |
| R | 4 | Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing. | Aug 01, 2022 | |
| R | 114 | Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing. | Aug 09, 2022 | |
| R | 7 | Visualization toolkit for SARS-CoV-2 whole genome sequencing data | Aug 07, 2022 | |
| Python | 14 | ENCODE whole-genome bisulfite sequencing (WGBS) pipeline | May 24, 2022 | |
| C | 71 | Whole Genome Simulator for Next-Generation Sequencing | Jul 21, 2022 | |
| Perl | 4 | Adaption of the original PennCNV algorithm for whole-genome sequencing data | Sep 02, 2021 | |
| Shell | 4 | MetaFX – library for feature extraction from whole-genome metagenome sequencing data | Oct 02, 2023 | |
| Python | 12 | In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data | Apr 04, 2023 | |
| R | 11 | West Coast Dream Team Whole Genome Bisulfite Sequencing | Apr 22, 2022 | |
| C++ | 120 | Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data | May 04, 2023 | |
| Python | 7 | CoVarPlot - Covarage Variant Plots for viral whole genome sequencing | May 06, 2022 | |
| R | 23 | Allele-specific copy number estimation with whole genome sequencing | Feb 22, 2023 | |
| Shell | 3 | A collection of scripts to run variant aggregation tests from whole-genome sequencing data. | Jun 07, 2022 | |
| C++ | 19 | Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. | Feb 10, 2023 | |
| Python | 9 | A python library for single cell whole-genome sequencing quality evaluation | May 10, 2021 | |
| Perl | 52 | Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing … | Feb 24, 2022 | |
| Python | 96 | Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | Jan 28, 2023 | |
| None | 38 | Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | May 31, 2023 | |
| C++ | 80 | 🌈Scaffold genome sequence assemblies using linked read sequencing data | Jul 10, 2022 | |
| JavaScript | 2 | Clinical DNA Sequencing Analysis and Data Warehouse | Mar 11, 2015 | |
| Python | 2 | Telomeasure estimates average telomere length from whole genome sequencing (WGS) BAM files. | Jun 14, 2022 | |
| Nextflow | 2 | Single Cell Genome Sequencing data analysis pipeline | Nov 08, 2022 | |
| None | 2 | Microbial Genome Circular plotting tool using Circos | Oct 23, 2022 | |
| R | 7 | scripts for "Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity and Outcome in Urothelial Bladder Carcinoma" | Mar 06, 2023 | |
| R | 4 | An R package to process and predict risk of adenocarcinoma progression from shallow whole-genome sequencing … | Jun 22, 2021 | |
| Python | 5 | Whole genome workflows | Jul 28, 2022 | |
| Python | 2 | A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA … | May 02, 2023 | |
| Perl | 8 | A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing … | Aug 04, 2022 | |
| C++ | 98 | Fast HLA type inference from whole-genome data | May 04, 2023 | |
| HTML | 2 | Identification and characterization of contamination sources in whole genome sequencing of Gyrodactylus bullatarudis parasites | Jun 26, 2021 | |
| Shell | 4 | Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria | Jun 11, 2021 | |
| None | 2 | Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations | Dec 13, 2022 | |
| Go | 2 | Automated data mangement for Oxford Nanopore DNA sequencing instruments | Apr 30, 2024 | |
| Python | 8 | Whole Genome Annotation Pipeline | Aug 13, 2022 | |
| None | 4 | Fast whole genome phylogeny | Jan 22, 2021 | |
| Makefile | 9 | :baby_bottle: Assemble the Genome in a Bottle sequencing data | May 21, 2022 | |
| Nextflow | 129 | Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing | Jan 28, 2023 | |
| WDL | 3 | Workflows for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing | Dec 13, 2023 | |
| Python | 2 | Pipeline for processing whole-genome Population STARR-seq data | May 28, 2021 | |
| C++ | 62 | A pipeline for analyzing DNA methylation data from bisulfite sequencing. | Aug 10, 2022 | |
| Python | 4 | Pipeline for BLAST analysis of high-throughput DNA sequencing data. | Aug 01, 2017 | |
| None | 11 | A Toolkit for analyzing next-generation DNA Re-Sequencing data | May 07, 2023 | |
| C# | 116 | Canvas - Copy number variant (CNV) calling from DNA sequencing data | Apr 19, 2023 |