|
|
HTML |
3 |
Metagenomic classification of long-read sequencing data |
Jul 22, 2022 |
|
|
C |
2 |
Metagenomic analysis pipeline aimed at synthetic long reads |
Dec 27, 2021 |
|
|
Python |
5 |
Snakemake workflow for functional analysis of metagenomic WGS read data. |
Mar 12, 2022 |
|
|
Python |
25 |
Long-read Isoform Quantification and Analysis |
May 02, 2023 |
|
|
Perl |
4 |
Nano2NGS: A framework for converting long-read sequencing data into NGS-liked mode for targeted mutation and … |
May 04, 2023 |
|
|
C |
4 |
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data |
Dec 19, 2023 |
|
|
C++ |
15 |
A long-read analysis toolbox for cancer genomics |
Apr 04, 2023 |
|
|
Python |
99 |
Technology agnostic long read analysis pipeline for transcriptomes |
Apr 29, 2023 |
|
|
R |
34 |
Miscellaneous functions for metagenomic analysis. |
Feb 22, 2023 |
|
|
Python |
48 |
Using kallisto for metagenomic analysis |
Jun 21, 2022 |
|
|
CSS |
10 |
Metagenomic Analysis in Real Time |
Apr 28, 2023 |
|
|
Python |
7 |
Metagenomic Intra-Species Diversity Analysis 2 |
Jul 20, 2022 |
|
|
C |
251 |
A complete pipeline for metagenomic analysis |
Apr 23, 2023 |
|
|
R |
4 |
Strain-level metagenomic analysis in R |
Sep 13, 2023 |
|
|
Nextflow |
17 |
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read … |
Apr 18, 2023 |
|
|
JavaScript |
47 |
A catalogue of available long read sequencing data analysis tools |
May 05, 2022 |
|
|
Python |
4 |
Plastic Enzymes Degrading in Metagenomic databases Analysis |
Oct 31, 2022 |
|
|
C++ |
100 |
Long read aligner |
Aug 17, 2022 |
|
|
Python |
5 |
closing gaps in long read assemblies by long read walking |
Mar 11, 2023 |
|
|
Jupyter Notebook |
10 |
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis. |
Feb 15, 2023 |
|
|
HTML |
2 |
Long-Read Sequencing Workshop |
Sep 21, 2020 |
|
|
C |
20 |
Long read to rMATS |
Jun 22, 2022 |
|
|
Jupyter Notebook |
65 |
Long read production pipelines |
Sep 29, 2022 |
|
|
Python |
2 |
Too long, didn't read |
Sep 03, 2021 |
|
|
Nextflow |
13 |
A containerized bioinformatics pipeline for viral metagenomic data analysis |
Apr 30, 2023 |
|
|
Nextflow |
3 |
Nextflow pipeline for the analysis of metagenomic short reads. |
Apr 28, 2023 |
|
|
Ruby |
2 |
Detecting and quantifying functional genes in short-read metagenomic datasets |
Aug 22, 2020 |
|
|
Perl |
14 |
MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) |
Mar 01, 2023 |
|
|
C |
163 |
Long read / genome alignment software |
Oct 09, 2022 |
|
|
Shell |
7 |
Long read error correction evaluation |
Jan 25, 2023 |
|
|
Python |
2 |
A tool for agile functional analysis of shotgun metagenomic data |
Mar 22, 2024 |
|
|
C++ |
50 |
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping |
Mar 22, 2023 |
|
|
Python |
89 |
a short-read polishing tool for long-read assemblies |
Apr 05, 2023 |
|
|
Roff |
91 |
A metagenomic and isolate assembly and analysis pipeline built with AMOS |
Sep 26, 2022 |
|
|
Jupyter Notebook |
4 |
Analysis of publicly available metagenomic sequencing data from humans with IBD. |
Sep 22, 2022 |
|
|
Ruby |
10 |
Powerful long read aligner for Ruby |
Jul 26, 2022 |
|
|
HTML |
2 |
https://thejacksonlaboratory.github.io/long-read-workshop-2019/ |
Feb 01, 2023 |
|
|
Shell |
7 |
A long-read SV calling pipeline |
Mar 31, 2023 |
|
|
wdl |
26 |
ENCODE long read RNA-seq pipeline |
Aug 09, 2022 |
|
|
Python |
60 |
Comparison of multiple long read datasets |
May 17, 2023 |
|
|
Python |
2 |
Path finding for long read assembly |
May 15, 2017 |
|
|
Jupyter Notebook |
3 |
tool for long read transcriptome assembly |
Aug 21, 2023 |
|
|
Rust |
2 |
Brutal Rewrite a long read corrector |
May 22, 2024 |
|
|
Jupyter Notebook |
7 |
Nanopore analysis of CO-transcriptional processing exposes the nascent transcriptome via direct long-read RNA-seq |
Apr 17, 2022 |
|
|
HTML |
5 |
Pipeline to pull microbial reads from WGS data and perform metagenomic analysis |
May 08, 2023 |
|
|
Shell |
2 |
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more |
May 06, 2023 |
|
|
Python |
5 |
A pipeline for long-read sequencing data. |
Jun 09, 2019 |
|
|
None |
577 |
Dungeons and Dragons - Too Long; Didn't Read |
Apr 25, 2023 |
|
|
C++ |
2 |
Linear-time de novo Long Read Assembler |
Jul 14, 2022 |
|
|
Python |
20 |
Scaffolding genomes using synthetic long read clouds |
Jan 31, 2021 |