|
|
C |
251 |
A complete pipeline for metagenomic analysis |
Apr 23, 2023 |
|
|
C |
2 |
Metagenomic analysis pipeline aimed at synthetic long reads |
Dec 27, 2021 |
|
|
Nextflow |
13 |
A containerized bioinformatics pipeline for viral metagenomic data analysis |
Apr 30, 2023 |
|
|
Nextflow |
3 |
Nextflow pipeline for the analysis of metagenomic short reads. |
Apr 28, 2023 |
|
|
Shell |
2 |
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more |
May 06, 2023 |
|
|
HTML |
5 |
Pipeline to pull microbial reads from WGS data and perform metagenomic analysis |
May 08, 2023 |
|
|
Shell |
4 |
Metagenomic functional annotation pipeline |
May 22, 2023 |
|
|
Groovy |
57 |
A scalable bacterial genome assembly, annotation and analysis pipeline |
Apr 30, 2023 |
|
|
Python |
18 |
Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs |
May 19, 2022 |
|
|
Perl |
85 |
Long-read metagenomic analysis |
May 05, 2023 |
|
|
Nextflow |
3 |
UW Virology's Clinically OK Metagenomic Pipeline |
May 27, 2022 |
|
|
Perl |
2 |
Bioinformatics pipeline for analyzing metagenomic data |
Oct 31, 2023 |
|
|
R |
34 |
Miscellaneous functions for metagenomic analysis. |
Feb 22, 2023 |
|
|
Python |
48 |
Using kallisto for metagenomic analysis |
Jun 21, 2022 |
|
|
CSS |
10 |
Metagenomic Analysis in Real Time |
Apr 28, 2023 |
|
|
Assembly |
17 |
Import of AMOS 1.3 and AMOS Compiler source releases. |
Aug 30, 2022 |
|
|
Python |
16 |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs |
May 18, 2022 |
|
|
Perl |
34 |
Metagenomic pipeline and other general scripts used in the lab. |
Feb 18, 2023 |
|
|
R |
10 |
Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data |
Apr 19, 2023 |
|
|
Python |
52 |
GraphBin: Refined binning of metagenomic contigs using assembly graphs |
May 18, 2022 |
|
|
Python |
7 |
Metagenomic Intra-Species Diversity Analysis 2 |
Jul 20, 2022 |
|
|
R |
4 |
Strain-level metagenomic analysis in R |
Sep 13, 2023 |
|
|
None |
2 |
clinical Pathogen Identification Pipeline based on METAgenomic sequencing |
Mar 31, 2019 |
|
|
Shell |
23 |
A pipeline for viral identification from metagenomic samples |
Mar 07, 2023 |
|
|
Nextflow |
37 |
Simple bacterial assembly and annotation pipeline |
Aug 09, 2022 |
|
|
None |
40 |
Read Assembly and Annotation Pipeline Tool |
Aug 01, 2022 |
|
|
Makefile |
88 |
ONT assembly and Illumina polishing pipeline |
Jan 28, 2023 |
|
|
HTML |
7 |
Consensus assembly and allele interpretation pipeline. |
Dec 18, 2021 |
|
|
Python |
3 |
Viral Metagenomics Assembly and Annotation Pipeline |
Dec 19, 2022 |
|
|
Nextflow |
23 |
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly |
May 04, 2023 |
|
|
Python |
72 |
Amos optimizer with JEstimator lib. |
Apr 19, 2023 |
|
|
R |
5 |
whofluIRMA - influenza assembly pipeline |
Feb 18, 2023 |
|
|
Python |
3 |
Bacterial genome assembly pipeline |
Mar 02, 2022 |
|
|
Shell |
2 |
Transcriptome Assembly Pipeline BPA2.1.0 |
Oct 06, 2020 |
|
|
Python |
4 |
Plastic Enzymes Degrading in Metagenomic databases Analysis |
Oct 31, 2022 |
|
|
TeX |
12 |
A pipeline for detecting mis-assemblies in metagenomic assemblies. |
Nov 02, 2020 |
|
|
C# |
311 |
Assembly Diff and Analysis Tool |
Aug 05, 2022 |
|
|
C# |
4 |
Assembly Diff and Analysis Tool |
Mar 07, 2023 |
|
|
C# |
2 |
Assembly Diff and Analysis Tool |
Dec 04, 2022 |
|
|
Nextflow |
2 |
Plasmid assembly, gene identification and annotation pipeline |
May 16, 2022 |
|
|
Nextflow |
6 |
Pipeline for metagenome and metatranscriptome joint assembly |
Feb 24, 2023 |
|
|
Jupyter Notebook |
4 |
Analysis of publicly available metagenomic sequencing data from humans with IBD. |
Sep 22, 2022 |
|
|
Python |
11 |
A pipeline to isolate and transcribe one language in mixed-language speech |
Jul 10, 2022 |
|
|
Perl |
9 |
Metagenomic functional annotation pipeline, used within the Human Microbiome Project |
Dec 08, 2021 |
|
|
Perl |
3 |
Assembly-based analysis |
Feb 01, 2020 |
|
|
Nextflow |
2 |
A monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of … |
May 14, 2024 |
|
|
Python |
2 |
mRNAseq assembly, evaluation, and expression analysis |
Apr 06, 2019 |
|
|
Python |
52 |
A hybrid assembly and MAG recovery pipeline (and more!) |
Apr 15, 2023 |
|
|
TypeScript |
20 |
Interactive object file browser with symbol, source, assembly, and analysis |
Jan 21, 2023 |
|
|
Nextflow |
4 |
SLAMSeq processing and analysis pipeline |
Aug 29, 2021 |