|
|
Python |
24 |
A simple tool for extracting reads from Oxford Nanopore fast5 files |
Aug 05, 2022 |
|
|
C++ |
261 |
De novo assembly from Oxford Nanopore reads. |
Jul 28, 2022 |
|
|
C++ |
29 |
De novo assembly from Oxford Nanopore reads. |
Apr 01, 2023 |
|
|
C++ |
249 |
adapter trimmer for Oxford Nanopore reads |
Apr 23, 2023 |
|
|
Rust |
2 |
work with the time stamps of Oxford Nanopore (ONT) fastq files |
Jan 10, 2023 |
|
|
Python |
2 |
A PyTorch Basecaller for Oxford Nanopore Reads |
May 06, 2022 |
|
|
Python |
331 |
A PyTorch Basecaller for Oxford Nanopore Reads |
Apr 27, 2023 |
|
|
C++ |
145 |
A LibTorch Basecaller for Oxford Nanopore Reads |
Apr 27, 2023 |
|
|
C |
96 |
Flip-flop basecaller for Oxford Nanopore reads |
Jan 28, 2023 |
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|
Python |
108 |
Training models for basecalling Oxford Nanopore reads |
Jan 28, 2023 |
|
|
C++ |
7 |
A LibTorch Basecaller for Oxford Nanopore Reads |
Feb 21, 2023 |
|
|
Python |
14 |
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria |
Jan 14, 2022 |
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|
Python |
121 |
a signal-level demultiplexer for Oxford Nanopore reads |
Mar 08, 2023 |
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|
Python |
2 |
A script for sorting, assessing and converting Oxford Nanopore reads |
Nov 26, 2017 |
|
|
None |
3 |
cgMLST from FASTQ reads |
May 26, 2021 |
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|
Python |
79 |
Analysis components from Oxford Nanopore Research |
Apr 21, 2023 |
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|
Python |
31 |
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads. |
Apr 03, 2023 |
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|
Python |
2 |
A tool to estimate genome size from fastq reads; python wrapper for KMC |
Dec 12, 2021 |
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|
Rust |
29 |
Command line utility for manipulating Illumina-generated FastQ files. |
Jun 16, 2022 |
|
|
None |
3 |
Dockerfile for the Albacore basecaller from Oxford Nanopore |
Jul 19, 2017 |
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|
Python |
21 |
Oxford Nanopore HDF/Fast5 to CRAM conversion tool |
Apr 18, 2023 |
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|
Python |
6 |
Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool. |
Jul 12, 2022 |
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|
Python |
14 |
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim. |
Apr 12, 2023 |
|
|
C |
45 |
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads. |
May 24, 2023 |
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|
Python |
2 |
Extract some fastq reads from the beginning of the files |
Jan 12, 2023 |
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|
Julia |
6 |
Datastores for reads, not your papa's FASTQ files. |
Jul 02, 2020 |
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|
Python |
42 |
Analysis pipelines from Oxford Nanopore Technologies' Research Division |
Mar 15, 2023 |
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|
Python |
26 |
Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files. |
Aug 11, 2022 |
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|
Python |
4 |
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … |
Apr 06, 2023 |
|
|
Python |
66 |
A Python command-line tool for parsing information from Apache log files. |
May 09, 2021 |
|
|
C++ |
14 |
Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads. |
Jul 20, 2022 |
|
|
C++ |
50 |
A C++ header-only library for reading Oxford Nanopore Fast5 files |
Jun 27, 2022 |
|
|
Python |
2 |
Python command-line tool for downloading from AndroidFileHost. |
Mar 20, 2021 |
|
|
Python |
92 |
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., … |
Apr 26, 2023 |
|
|
Python |
115 |
A basecaller for Oxford Nanopore Technologies' sequencers |
Apr 11, 2023 |
|
|
Python |
13 |
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to … |
Sep 09, 2022 |
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|
Python |
23 |
Remove lambda phage reads from a fastq file |
Apr 26, 2023 |
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|
Python |
6 |
YamlStripper is a Python command-line tool for removing specified fields from YAML files. |
Apr 26, 2023 |
|
|
C |
3 |
A command-line tool for extracting tokens from MorphAdorner files. |
Aug 13, 2019 |
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|
Python |
2 |
Build a Python command line tool from scratch |
Aug 06, 2022 |
|
|
Ruby |
4 |
Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd. |
Dec 14, 2022 |
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|
Python |
5 |
A command-line tool written in Python 3 to download files from VirusTotal |
Aug 16, 2022 |
|
|
Python |
43 |
A Python command line tool to download MP3 files from a Bandcamp page. |
Apr 26, 2022 |
|
|
Jupyter Notebook |
39 |
Experimental pipeline for correcting nanopore reads |
Sep 17, 2022 |
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|
Python |
10 |
Functions to extract information from Oxford Nanopore sequencing data and alignments |
Aug 31, 2022 |
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|
Rust |
3 |
A fast bioinformatics tool for (colored) cDBG construction from reads in .fasta and .fastq formats |
Oct 14, 2022 |
|
|
C |
2 |
A tool to order FASTQ reads using elastic cluster mapping |
May 04, 2023 |
|
|
Shell |
8 |
Command line tool for descriptively tagging files |
Apr 25, 2022 |
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|
C# |
2 |
Command-line tool for modifying localization files |
Mar 31, 2021 |
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|
Python |
31 |
Command line tool for validating GLSL files |
Aug 07, 2022 |