|
|
Shell |
2 |
Get the most heterozygous region from a diploid genome assembly |
Apr 06, 2020 |
|
|
C++ |
39 |
Haplotype aware de novo assembly of diploid genome from long reads |
May 27, 2022 |
|
|
None |
21 |
A complete diploid human genome |
Nov 18, 2022 |
|
|
Perl |
5 |
Tools for updating a genome assembly |
Dec 14, 2021 |
|
|
Nextflow |
2 |
Only The Best (Genome Assembly Tools) |
Jul 02, 2022 |
|
|
Shell |
8 |
Pipelines for Drosophila genome assembly and analysis |
Dec 14, 2021 |
|
|
Python |
3 |
Tools to correct genome assembly using NGS data |
Jan 18, 2023 |
|
|
Groovy |
57 |
A scalable bacterial genome assembly, annotation and analysis pipeline |
Apr 30, 2023 |
|
|
None |
3 |
BIO326 Genome sequencing; tools and analysis |
Feb 21, 2024 |
|
|
Python |
5 |
bacterial genome assembly |
Aug 30, 2022 |
|
|
None |
2 |
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis |
Apr 18, 2024 |
|
|
Python |
31 |
Making diploid assembly becomes common practice for genomic study |
Mar 16, 2022 |
|
|
Python |
319 |
Tools for fast and flexible genome assembly scaffolding and improvement |
Apr 25, 2023 |
|
|
Python |
3 |
Bacterial genome assembly pipeline |
Mar 02, 2022 |
|
|
AMPL |
303 |
Genome assembly evaluation tool |
Apr 24, 2023 |
|
|
None |
2 |
Organelle Genome Assembly Gallery |
Dec 14, 2021 |
|
|
Shell |
2 |
scripts for NGS data analysis, include genome assembly and variants detection |
May 01, 2023 |
|
|
Perl |
8 |
Denovo assembly and analysis of Oryza sativa ssp. indica Tetep genome |
May 05, 2023 |
|
|
C++ |
16 |
Tool for globally phasing diploid assembly graphs with orthogonal data |
Apr 27, 2023 |
|
|
HTML |
2 |
Pipeline for ASE (allele specific expression) using competitive alignment to diploid genome |
Apr 12, 2022 |
|
|
Shell |
3 |
Scripts used for whitefish genome assembly/analysis (De-Kayne, Zoller & Feulner 2020) |
Jan 01, 2022 |
|
|
Java |
3 |
Parallel genome assembly using Hyracks |
Jul 29, 2020 |
|
|
HTML |
2 |
Mitochondrial Genome Assembly Assessment Visualization |
Jan 31, 2023 |
|
|
None |
7 |
Notes on SNP-related tools and genome variation analysis |
Aug 24, 2022 |
|
|
Python |
5 |
viral-ngs: genome assembly and scaffolding |
Mar 23, 2021 |
|
|
Python |
12 |
An extensible framework for genome assembly. |
Nov 29, 2022 |
|
|
Python |
2 |
Genome Assembly Evaluation, Metrics and Reporting |
Sep 28, 2021 |
|
|
Perl |
160 |
Genome Assembly and Annotation Service code |
Aug 17, 2022 |
|
|
Python |
7 |
scripts associated with yam genome assembly |
Jul 10, 2022 |
|
|
Julia |
2 |
Lolium rigidum genome assembly and annotation |
Jan 23, 2023 |
|
|
C |
3 |
Method for estimating the date of Neanderthal gene flow using a single diploid genome |
Nov 20, 2019 |
|
|
HTML |
6 |
Scaffolding a genome sequence assembly using ABySS |
Sep 10, 2021 |
|
|
Python |
11 |
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline. |
Nov 09, 2021 |
|
|
Python |
3 |
Assign chromosome names to a genome assembly |
Nov 06, 2022 |
|
|
Perl |
21 |
🍶Genome assembly with short sequence reads |
Jul 23, 2022 |
|
|
Python |
66 |
🔗Genome assembly scaffolder using minimizer graphs |
Jul 22, 2022 |
|
|
JavaScript |
22 |
Visualization tool for (meta)genome assembly graphs |
Sep 25, 2022 |
|
|
Python |
2 |
Genome assembly taxonomy summary and assessment tool. |
Mar 13, 2023 |
|
|
Python |
201 |
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS) |
May 24, 2023 |
|
|
Python |
2 |
De novo Long-read Genome Assembly Pipeline |
Mar 07, 2024 |
|
|
Python |
4 |
Pan-genome construction/analysis tools centered around PATRIC and antimicrobial resistance |
Aug 19, 2022 |
|
|
Perl |
3 |
Tools for Intensive Genome alignment of Extracelllar smallRNA (TIGER) analysis pipeline |
Feb 12, 2023 |
|
|
Python |
2 |
collection of tools for the analysis and cleaning of genome assemblies |
Dec 31, 2023 |
|
|
WDL |
3 |
Workflows for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing |
Dec 13, 2023 |
|
|
C |
2 |
GenomeTools genome analysis system. |
Nov 11, 2022 |
|
|
Python |
4 |
Genome Decomposition Analysis pipeline |
Jan 09, 2023 |
|
|
C |
2 |
GenomeTools genome analysis system. |
Dec 12, 2017 |
|
|
Python |
25 |
MGnify genome analysis pipeline |
Jun 16, 2022 |
|
|
Perl |
3 |
Assembly-based analysis |
Feb 01, 2020 |
|
|
Python |
10 |
Genome assembly soft-masking using Red (REpeat Detector) |
Mar 30, 2022 |