|
|
Python |
5 |
viral-ngs: genome assembly and scaffolding |
Mar 23, 2021 |
|
|
HTML |
6 |
Scaffolding a genome sequence assembly using ABySS |
Sep 10, 2021 |
|
|
JavaScript |
272 |
Fast, flexible and extensible genome browser. |
May 14, 2023 |
|
|
Perl |
9 |
Wrapper scripts to run genome assembly scaffolding tools and scripts to analyse the output for … |
Dec 14, 2021 |
|
|
Perl |
5 |
Tools for updating a genome assembly |
Dec 14, 2021 |
|
|
Scala |
272 |
Pilon is an automated genome assembly improvement and variant detection tool |
Aug 04, 2022 |
|
|
Python |
6 |
Diploid genome assembly analysis tools |
Oct 12, 2022 |
|
|
C++ |
54 |
✏️ultra fast and scalable genome assembly polishing |
May 23, 2022 |
|
|
Nextflow |
2 |
Only The Best (Genome Assembly Tools) |
Jul 02, 2022 |
|
|
Python |
6 |
Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads |
Jul 08, 2021 |
|
|
Perl |
21 |
🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling |
Apr 28, 2022 |
|
|
Python |
3 |
Tools to correct genome assembly using NGS data |
Jan 18, 2023 |
|
|
Python |
5 |
bacterial genome assembly |
Aug 30, 2022 |
|
|
Shell |
8 |
Pipelines for Drosophila genome assembly and analysis |
Dec 14, 2021 |
|
|
Python |
2 |
Genome Assembly Evaluation, Metrics and Reporting |
Sep 28, 2021 |
|
|
Perl |
160 |
Genome Assembly and Annotation Service code |
Aug 17, 2022 |
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|
Julia |
2 |
Lolium rigidum genome assembly and annotation |
Jan 23, 2023 |
|
|
Ruby |
5 |
genome improvement and finishing without further sequencing effort |
Apr 28, 2020 |
|
|
Python |
3 |
Bacterial genome assembly pipeline |
Mar 02, 2022 |
|
|
AMPL |
303 |
Genome assembly evaluation tool |
Apr 24, 2023 |
|
|
None |
2 |
Organelle Genome Assembly Gallery |
Dec 14, 2021 |
|
|
Python |
12 |
An extensible framework for genome assembly. |
Nov 29, 2022 |
|
|
Python |
2 |
Genome assembly taxonomy summary and assessment tool. |
Mar 13, 2023 |
|
|
Python |
22 |
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related … |
Aug 23, 2022 |
|
|
Java |
3 |
Parallel genome assembly using Hyracks |
Jul 29, 2020 |
|
|
HTML |
2 |
Mitochondrial Genome Assembly Assessment Visualization |
Jan 31, 2023 |
|
|
Python |
7 |
Django utility for test scaffolding. Tools to create basic tests fast |
Nov 16, 2021 |
|
|
Jupyter Notebook |
9 |
Fast and flexible finite element tools in pure SciPy |
Aug 18, 2021 |
|
|
Python |
11 |
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline. |
Nov 09, 2021 |
|
|
JavaScript |
22 |
Visualization tool for (meta)genome assembly graphs |
Sep 25, 2022 |
|
|
Python |
14 |
Fast, flexible tools to simplify scientific Python |
Apr 10, 2023 |
|
|
TypeScript |
6 |
Fast scaffolding for TypeScript projects |
Apr 21, 2023 |
|
|
None |
2 |
Genome assembly - From theory to practice (and back) |
May 30, 2020 |
|
|
None |
2 |
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis |
Apr 18, 2024 |
|
|
JavaScript |
3 |
Scaffolding genome sequence assemblies using a linkage map |
Dec 15, 2020 |
|
|
Python |
7 |
scripts associated with yam genome assembly |
Jul 10, 2022 |
|
|
Swift |
1574 |
A fast, lightweight and flexible Swift syntax highlighter for blogs, tools and fun! |
Sep 22, 2022 |
|
|
XSLT |
7 |
Approaches and tools for Metadata Improvement and Guidance. |
Mar 11, 2019 |
|
|
None |
2 |
CCGP Repository for the genome assembly working group. |
Feb 07, 2022 |
|
|
Perl |
23 |
Assembly based core genome SNP alignments for bacteria |
Apr 12, 2023 |
|
|
Shell |
2 |
Viral genome assembly pipeline for WGS using ONT |
Jan 27, 2023 |
|
|
Python |
9 |
An efficient assembly tool for plant mitochondrial genome |
Sep 29, 2023 |
|
|
JavaScript |
5 |
Friendly scaffolding tools for pupbot. |
Mar 14, 2023 |
|
|
Python |
3 |
Genome assembly gap long read support and reassembly tool |
Sep 23, 2022 |
|
|
Groovy |
57 |
A scalable bacterial genome assembly, annotation and analysis pipeline |
Apr 30, 2023 |
|
|
JavaScript |
2 |
Simple but highly flexible scaffolding CLI and Node API. |
Jan 03, 2020 |
|
|
Python |
2 |
mtGasp: Snakemake pipeline for de novo mitochondrial genome assembly and standardization |
Mar 28, 2023 |
|
|
Shell |
2 |
scripts for NGS data analysis, include genome assembly and variants detection |
May 01, 2023 |
|
|
Nextflow |
33 |
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads |
Mar 29, 2023 |
|
|
None |
3 |
Dovetail2 H. glycines genome analyses -- falcon,falcon-unzip, scaffolding |
Feb 01, 2024 |