|
R |
6 |
Preprocessing, analyzing, and reporting of RNA-seq data |
Aug 08, 2022 |
|
JavaScript |
135 |
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets |
Aug 07, 2022 |
|
R |
163 |
R package for analyzing single-cell RNA-seq data |
Apr 03, 2023 |
|
Python |
11 |
CAFU: A Galaxy framework for exploring unmapped RNA-Seq data |
Dec 12, 2021 |
|
HTML |
2 |
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data. |
Aug 01, 2020 |
|
Perl |
4 |
Roddy RNA-seq Workflow Plugin |
Sep 06, 2022 |
|
Python |
259 |
RNA-seq workflow using STAR and DESeq2 |
Apr 26, 2023 |
|
R |
4 |
RNA-Seq Workflow Based on Snakemake and Conda |
May 28, 2020 |
|
None |
76 |
kallisto | bustools workflow for pre-processing single-cell RNA-seq data |
Jul 21, 2022 |
|
R |
6 |
A fully Bayesian, CUDA-accelerated method of analyzing RNA-seq data |
Apr 29, 2020 |
|
Python |
5 |
A Snakemake workflow to process paired-end RNA-Seq data. |
Sep 23, 2021 |
|
Shell |
2 |
this is a example of RNA-seq data analysis workflow |
Dec 07, 2017 |
|
Python |
5 |
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR |
Oct 25, 2022 |
|
R |
149 |
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data |
Apr 27, 2023 |
|
Python |
12 |
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data |
Jan 04, 2023 |
|
R |
5 |
sleuth workflow for processing zika RNA-seq dataset |
May 28, 2020 |
|
Common Workflow Language |
8 |
:microscope: RNA-Seq workflow for Kids-First DRC |
Feb 17, 2023 |
|
R |
11 |
An R package of RNA-seq workflow |
Dec 16, 2021 |
|
Common Workflow Language |
2 |
GDC RNA-Seq STAR 2-Pass Workflow |
Sep 26, 2022 |
|
Python |
3 |
Snakemake workflow to analyze bulk RNA-seq |
Nov 08, 2022 |
|
Groovy |
6 |
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data |
Dec 14, 2023 |
|
Python |
25 |
(formerly eelpond) an automated RNA-Seq workflow system |
Sep 28, 2022 |
|
R |
60 |
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth. |
Mar 02, 2023 |
|
None |
57 |
RNA-seq workflow: gene-level exploratory analysis and differential expression |
Apr 27, 2023 |
|
R |
2 |
Interpretation of RNA-seq data |
Apr 04, 2022 |
|
HTML |
2 |
script for RNA-seq and Chip-seq |
Apr 17, 2021 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
R |
17 |
RNA-seq workflow for differential transcript usage following Salmon quantification |
Mar 13, 2023 |
|
HTML |
6 |
A comprehensive analysis tool for Ribo-seq and small RNA-seq data |
May 02, 2022 |
|
R |
6 |
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data |
Aug 10, 2022 |
|
Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
None |
6 |
Workflow for ZINB-WaVE + apeglm intergration for single-cell RNA-seq |
Jun 17, 2022 |
|
None |
26 |
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq |
Apr 24, 2023 |
|
C# |
6 |
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data |
Mar 02, 2022 |
|
Jupyter Notebook |
2 |
Single nuclei RNA-seq oxytocin data |
Mar 05, 2022 |
|
HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
|
CSS |
20 |
Workshop • Analysis of RNA-seq data |
Jul 18, 2022 |
|
Python |
3 |
Find circRNAs in RNA-seq data. |
Feb 02, 2022 |
|
Python |
12 |
Find circRNAs in RNA-seq data. |
Jul 12, 2022 |
|
Python |
4 |
Single-cell RNA-seq data analysis and visualization |
Jun 12, 2022 |
|
C |
197 |
TCR and BCR assembly from RNA-seq data |
May 13, 2023 |
|
HTML |
16 |
UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat |
May 23, 2023 |
|
R |
6 |
Workflow for creating gene module predictors from RNA-Seq of MDD |
Mar 30, 2022 |
|
R |
3 |
Experiment Data Package for TCGA processed RNA-Seq data |
Dec 10, 2020 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
Java |
92 |
Java tools for analyzing Drop-seq data |
Jul 26, 2022 |
|
Jupyter Notebook |
3 |
🛠 under active development | RNA-Seq Workflow in Jupyter Notebook |
Jan 27, 2023 |
|
JavaScript |
8 |
Exploring Flat Data Workflow |
Mar 22, 2022 |
|
Python |
36 |
Dimensionality reduction for single cell RNA-seq data |
Dec 09, 2022 |