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Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
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HTML |
10 |
Self-guided educational workshop for ChIP-Seq and RNA-Seq |
Sep 19, 2022 |
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R |
6 |
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data |
Aug 10, 2022 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Shell |
5 |
Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...) |
Jan 31, 2023 |
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Python |
19 |
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis |
Apr 10, 2023 |
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R |
16 |
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set |
May 28, 2020 |
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HTML |
2 |
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data. |
Aug 01, 2020 |
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Python |
2 |
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data |
Nov 01, 2013 |
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Python |
83 |
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data |
Mar 07, 2023 |
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Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |
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Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
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None |
2 |
Simplified ChIP-exo and ChIP-seq assays |
Aug 26, 2022 |
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C |
1305 |
RNA-seq aligner |
Aug 17, 2022 |
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Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
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Shell |
3 |
RNA-seq analyses. |
May 16, 2022 |
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R |
18 |
RNA-seq analysis |
Sep 21, 2022 |
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C |
3 |
RNA-seq aligner |
Jul 20, 2020 |
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C++ |
8 |
RNA-Seq sampling |
Mar 13, 2023 |
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R |
4 |
Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment |
Mar 31, 2023 |
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Shell |
4 |
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex |
Oct 14, 2021 |
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R |
7 |
Scripts for RNA seq analysis |
Apr 15, 2022 |
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Python |
16 |
scripts for RNA-Seq analysis |
Mar 06, 2023 |
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None |
11 |
Notes on ChIP-seq and other-seq-related tools |
Jul 20, 2022 |
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HTML |
2 |
RNA-Seq Demystified workshop |
Jun 13, 2021 |
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Python |
2 |
RNA-Seq NGS Pipeline |
Feb 21, 2023 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
Python |
20 |
Bulk RNA-seq analysis. |
Aug 07, 2022 |
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R |
9 |
RNA-seq analysis scripts |
Apr 04, 2022 |
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Python |
3 |
pipline of RNA-seq |
Apr 17, 2021 |
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Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |
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None |
2 |
Automated RNA-Seq Analysis |
Sep 14, 2021 |
|
Python |
183 |
ENCODE ChIP-seq pipeline |
Aug 11, 2022 |
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R |
6 |
ChIP-seq Intersample Normalization |
Aug 05, 2022 |
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C++ |
2 |
ChIP-seq motif analysis |
Sep 20, 2023 |
|
R |
9 |
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) |
May 23, 2022 |
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C++ |
10 |
ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples. |
Jun 24, 2022 |
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HTML |
6 |
A comprehensive analysis tool for Ribo-seq and small RNA-seq data |
May 02, 2022 |
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C++ |
87 |
Spliced read mapper for RNA-Seq |
Feb 23, 2023 |
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Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
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HTML |
4 |
RNA-seq analysis for psychENCODE R01 |
Nov 09, 2022 |
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Python |
5 |
Epitope discovery pipeline for RNA-seq |
Jan 25, 2020 |
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C |
3 |
C++ utilities for UMI RNA-seq |
Jan 19, 2022 |
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C# |
6 |
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data |
Mar 02, 2022 |
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Jupyter Notebook |
7 |
Simulation tool for ChIP- and other -seq experiments |
Mar 13, 2023 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |
|
Python |
259 |
RNA-seq workflow using STAR and DESeq2 |
Apr 26, 2023 |
|
R |
3 |
Analysis and visualization of RNA-Seq results |
Oct 06, 2023 |
|
HTML |
16 |
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq. |
Apr 25, 2022 |