|
Python |
166 |
Bench-marking classification tools for scRNA-seq data |
May 15, 2023 |
|
Python |
3 |
Tools for continuously bench-marking qutip's development branch |
Aug 08, 2022 |
|
R |
5 |
Tools for clustering multiple-subject scRNA-seq |
Apr 27, 2022 |
|
R |
7 |
A clusterability measure for scRNA-seq data. |
May 31, 2022 |
|
R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
|
Python |
4 |
Cell cycle classifier for scRNA-seq data. |
Feb 25, 2022 |
|
Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
|
R |
4 |
A list of scRNA-seq analysis tools |
Aug 31, 2022 |
|
R |
322 |
A list of scRNA-seq analysis tools |
Oct 16, 2022 |
|
Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
|
R |
18 |
scRNA-seq data visualization from scrattch |
Jun 21, 2022 |
|
R |
8 |
Integrative analysis for scTCR- and scRNA-seq data |
Nov 04, 2022 |
|
Python |
217 |
Deep count autoencoder for denoising scRNA-seq data |
Apr 04, 2023 |
|
R |
113 |
Multi-sample multi-group scRNA-seq analysis tools |
Apr 16, 2023 |
|
HTML |
14 |
Marker gene selection from scRNA-seq data |
May 10, 2022 |
|
R |
2 |
scRNA-seq data explorer based on Shiny |
Mar 23, 2022 |
|
Jupyter Notebook |
7 |
Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication |
Dec 16, 2022 |
|
Python |
11 |
Consistent Clusters for scRNA-seq |
Nov 25, 2022 |
|
Jupyter Notebook |
2 |
Python pipelines for analysis of adipocyte scRNA-seq data |
Feb 24, 2022 |
|
HTML |
8 |
scRNA-Seq analysis vignettes |
Nov 05, 2021 |
|
R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
|
R |
83 |
Accurate and robust imputation of scRNA-seq data |
Apr 10, 2023 |
|
R |
10 |
Processing scRNA-seq data with kallisto|bustools pipeline |
Dec 08, 2022 |
|
R |
2 |
Shiny app to explore Clytia scRNA-seq data |
Oct 06, 2022 |
|
Shell |
4 |
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex |
Oct 14, 2021 |
|
R |
47 |
scPred package for cell type prediction from scRNA-seq data |
Mar 05, 2023 |
|
R |
14 |
Flexible, probablistic metrics for quality control of scRNA-seq data |
May 19, 2022 |
|
R |
19 |
Cell-cell communication and lineage inference for scRNA-seq data |
Mar 24, 2022 |
|
R |
4 |
A Shiny app for analyzing and visualizing scRNA-seq data. |
Jan 27, 2023 |
|
R |
3 |
scBubbletree: quantitative tool for visual exploration of scRNA-seq data |
Mar 14, 2023 |
|
Jupyter Notebook |
5 |
useful functions for scRNA-seq analysis |
May 24, 2022 |
|
HTML |
2 |
Identifying robust gene-gene correlations in scRNA-seq data |
May 04, 2023 |
|
Python |
2 |
Prediction of RNA splicing kinetics in scRNA-seq data |
Apr 10, 2023 |
|
R |
87 |
Conversion between scRNA-seq objects |
Apr 17, 2023 |
|
Jupyter Notebook |
5 |
scRNA-seq, regulation, and sysbio |
Jun 17, 2023 |
|
Python |
6 |
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data |
May 24, 2022 |
|
Python |
6 |
A simple python package for doublet detection in scRNA-seq data |
Aug 15, 2022 |
|
Jupyter Notebook |
38 |
Harmony framework for connecting scRNA-seq data from discrete time points |
Mar 12, 2023 |
|
HTML |
4 |
Extended Louvain Clustering algorithm for applications in scRNA-Seq data analysis |
Dec 08, 2023 |
|
Python |
3 |
scRNA-seq pipeline using Salmon for quantification |
Feb 08, 2022 |
|
R |
2 |
Neighbor-seq infers direct cell-cell interaction network in tissues from scRNA-seq data. |
Mar 24, 2023 |
|
R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
|
Python |
31 |
Demultiplexing pooled scRNA-seq data with or without genotype reference |
Jul 28, 2022 |
|
Python |
2 |
Spatial Transcritome Annotation with scRNA-seq data and Downstream Analysis |
Nov 18, 2022 |
|
Perl |
2 |
mapping somatic variants to cell barcodes in scRNA-Seq data |
Sep 03, 2022 |
|
R |
4 |
Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models |
Oct 08, 2023 |
|
None |
2 |
Codes used in scRNA-seq analysis. |
Jan 20, 2024 |
|
None |
2 |
Using a VAE model with flexible priors for modelling scRNA-seq data |
Oct 08, 2020 |
|
R |
2 |
Codes for computational analysis of scRNA-seq data of mouse motor neurons |
Aug 22, 2023 |
|
Python |
2 |
Cloud storage bench marking services for S3, GCS and Azure |
May 27, 2020 |