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R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
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HTML |
8 |
scRNA-Seq analysis vignettes |
Nov 05, 2021 |
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Jupyter Notebook |
2 |
Python pipelines for analysis of adipocyte scRNA-seq data |
Feb 24, 2022 |
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Jupyter Notebook |
5 |
useful functions for scRNA-seq analysis |
May 24, 2022 |
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Python |
2 |
Spatial Transcritome Annotation with scRNA-seq data and Downstream Analysis |
Nov 18, 2022 |
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None |
2 |
Codes used in scRNA-seq analysis. |
Jan 20, 2024 |
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HTML |
4 |
Extended Louvain Clustering algorithm for applications in scRNA-Seq data analysis |
Dec 08, 2023 |
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Jupyter Notebook |
3 |
Analysis of public and unpublished scRNA-seq data from bone marrow donors |
Sep 24, 2022 |
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R |
4 |
A list of scRNA-seq analysis tools |
Aug 31, 2022 |
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R |
49 |
Haplotype-aware CNV analysis in scRNA-Seq |
Aug 12, 2022 |
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R |
322 |
A list of scRNA-seq analysis tools |
Oct 16, 2022 |
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Jupyter Notebook |
7 |
Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication |
Dec 16, 2022 |
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R |
2 |
Codes for computational analysis of scRNA-seq data of mouse motor neurons |
Aug 22, 2023 |
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R |
7 |
A clusterability measure for scRNA-seq data. |
May 31, 2022 |
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Python |
4 |
Cell cycle classifier for scRNA-seq data. |
Feb 25, 2022 |
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Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
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Python |
3 |
Analysis of imbalanced data and it's impacts in a scRNA-seq integration setting |
Nov 28, 2022 |
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Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
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R |
18 |
scRNA-seq data visualization from scrattch |
Jun 21, 2022 |
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R |
2 |
Bootstrapping methods for 3' UTR analysis of scRNA-seq |
Nov 14, 2023 |
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R |
83 |
Accurate and robust imputation of scRNA-seq data |
Apr 10, 2023 |
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R |
113 |
Multi-sample multi-group scRNA-seq analysis tools |
Apr 16, 2023 |
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R |
38 |
A R package for integrated scRNA-seq data analysis using the RPCI algorithm |
Feb 27, 2023 |
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Python |
3 |
Bench-marking classification tools for scRNA-seq data |
Jun 12, 2022 |
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Python |
217 |
Deep count autoencoder for denoising scRNA-seq data |
Apr 04, 2023 |
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Python |
166 |
Bench-marking classification tools for scRNA-seq data |
May 15, 2023 |
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R |
19 |
Cell-cell communication and lineage inference for scRNA-seq data |
Mar 24, 2022 |
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R |
4 |
A Shiny app for analyzing and visualizing scRNA-seq data. |
Jan 27, 2023 |
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Jupyter Notebook |
5 |
scRNA-seq, regulation, and sysbio |
Jun 17, 2023 |
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HTML |
14 |
Marker gene selection from scRNA-seq data |
May 10, 2022 |
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R |
2 |
scRNA-seq data explorer based on Shiny |
Mar 23, 2022 |
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R |
5 |
Convenient, high-level functions for EZ(-er) scRNA-seq analysis |
Jan 28, 2023 |
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R |
13 |
Proteomics Toolset for Integrative Data Analysis |
Jun 27, 2022 |
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R |
25 |
Single cell data integrative analysis |
Apr 18, 2023 |
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Python |
11 |
Consistent Clusters for scRNA-seq |
Nov 25, 2022 |
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R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
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R |
10 |
Processing scRNA-seq data with kallisto|bustools pipeline |
Dec 08, 2022 |
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R |
2 |
Shiny app to explore Clytia scRNA-seq data |
Oct 06, 2022 |
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Shell |
4 |
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex |
Oct 14, 2021 |
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R |
47 |
scPred package for cell type prediction from scRNA-seq data |
Mar 05, 2023 |
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R |
14 |
Flexible, probablistic metrics for quality control of scRNA-seq data |
May 19, 2022 |
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R |
3 |
scBubbletree: quantitative tool for visual exploration of scRNA-seq data |
Mar 14, 2023 |
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R |
5 |
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data |
Jan 28, 2021 |
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HTML |
2 |
Identifying robust gene-gene correlations in scRNA-seq data |
May 04, 2023 |
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Python |
2 |
Prediction of RNA splicing kinetics in scRNA-seq data |
Apr 10, 2023 |
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Python |
2 |
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics |
Oct 05, 2022 |
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R |
3 |
The scRNA-seq data IO between R and Python(R version) |
Mar 08, 2024 |
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Jupyter Notebook |
4 |
Code to reproduce analysis and figures for scRNA-seq analysis of endometriosis in Tan et al. … |
Feb 01, 2023 |
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R |
87 |
Conversion between scRNA-seq objects |
Apr 17, 2023 |
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HTML |
4 |
Deep learning tackles single-cell analysis - A survey of deep learning for scRNA-seq analysis |
May 15, 2022 |