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|
C |
2 |
Metagenomic analysis pipeline aimed at synthetic long reads |
Dec 27, 2021 |
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Python |
22 |
Simulate metagenomic short reads from one or more populations. |
Apr 07, 2023 |
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|
Nextflow |
3 |
Nextflow pipeline for the analysis of metagenomic short reads. |
Apr 28, 2023 |
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None |
2 |
Ground truth metagenomic profiles in CAMI format for the 25 metagenomic reads in Sun et … |
Dec 08, 2021 |
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|
HTML |
5 |
Pipeline to pull microbial reads from WGS data and perform metagenomic analysis |
May 08, 2023 |
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Perl |
14 |
MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) |
Mar 01, 2023 |
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|
Ruby |
14 |
clean, easy, ec2 wrapper |
Aug 13, 2019 |
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Python |
6 |
Opinionated wrapper around boto that reads yaml |
Aug 04, 2019 |
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|
Rust |
21 |
Metagenomic Binning Algorithm |
Apr 16, 2023 |
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Python |
2 |
Python wrapper created to help download metagenomic data from SRA or ENA databases |
Aug 19, 2022 |
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|
C++ |
206 |
Classifier for metagenomic sequences |
Apr 26, 2023 |
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Perl |
85 |
Long-read metagenomic analysis |
May 05, 2023 |
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|
Shell |
4 |
Metagenomic functional annotation pipeline |
May 22, 2023 |
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Python |
22 |
StaG Metagenomic Workflow Collaboration |
May 05, 2023 |
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|
R |
33 |
Analysing Metagenomic Species (MGS) |
Dec 22, 2021 |
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|
C |
3 |
simple, clean ruby wrapper for libmemcached 1.0 |
Jul 06, 2013 |
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|
JavaScript |
16 |
Python wrapper to clean up Wekan database |
Nov 01, 2021 |
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|
Swift |
16 |
An object oriented and clean wrapper UserDefaults. |
Jan 26, 2023 |
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Python |
5 |
Taxonomic classification of metagenomic contigs |
Jul 12, 2022 |
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|
R |
34 |
Miscellaneous functions for metagenomic analysis. |
Feb 22, 2023 |
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Python |
3 |
Variational autoencoder for metagenomic binning |
Mar 10, 2023 |
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None |
3 |
Hadoop framework for metagenomic processing |
Oct 07, 2019 |
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|
Python |
48 |
Using kallisto for metagenomic analysis |
Jun 21, 2022 |
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|
CSS |
10 |
Metagenomic Analysis in Real Time |
Apr 28, 2023 |
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|
Python |
180 |
Variational autoencoder for metagenomic binning |
Apr 27, 2023 |
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|
Python |
2 |
Functional UniFrac for metagenomic data |
May 12, 2023 |
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|
Python |
7 |
Metagenomic Intra-Species Diversity Analysis 2 |
Jul 20, 2022 |
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|
Python |
8 |
A snakemake workflow for metagenomic projects |
Apr 01, 2022 |
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|
C |
251 |
A complete pipeline for metagenomic analysis |
Apr 23, 2023 |
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C++ |
31 |
Estimate metagenomic coverage and sequence diversity |
Jun 02, 2022 |
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|
Nextflow |
3 |
UW Virology's Clinically OK Metagenomic Pipeline |
May 27, 2022 |
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|
Nextflow |
2 |
Nextflow implementation of Anvio metagenomic workflow |
Jan 14, 2021 |
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R |
18 |
Phylogenetic Organization of Metagenomic Signals (POMS) |
Mar 06, 2023 |
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|
R |
4 |
Strain-level metagenomic analysis in R |
Sep 13, 2023 |
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|
Perl |
2 |
Bioinformatics pipeline for analyzing metagenomic data |
Oct 31, 2023 |
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|
Shell |
96 |
Wrapper script for managing clean chroots under Arch Linux |
May 01, 2023 |
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|
R |
105 |
Curated Metagenomic Data of the Human Microbiome |
Mar 29, 2023 |
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|
Python |
16 |
Metagenomic binning based on Hi-C data |
Dec 14, 2022 |
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Perl |
2 |
PhylOTU identifies microbial OTUs from metagenomic data |
Sep 08, 2014 |
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|
HTML |
3 |
Metagenomic classification of long-read sequencing data |
Jul 22, 2022 |
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|
C++ |
38 |
Predict prokaryotic host for phage metagenomic sequences |
Jun 21, 2022 |
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|
Rust |
2 |
Utility functions for the bird metagenomic toolkit |
Jan 08, 2023 |
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|
Perl |
6 |
BLAST-based validation of metagenomic sequence assignments |
Feb 13, 2023 |
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|
Python |
4 |
Plastic Enzymes Degrading in Metagenomic databases Analysis |
Oct 31, 2022 |
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|
Python |
6 |
A hierarchical taxonomic classifier for metagenomic sequences |
Dec 20, 2022 |
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|
R |
2 |
Statistical machine learning for shotgun metagenomic data |
Aug 12, 2018 |
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|
Python |
2 |
A tool to estimate genome size from fastq reads; python wrapper for KMC |
Dec 12, 2021 |
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|
C# |
7 |
PCL wrapper for the Stream class that allows bit-level reads and writes. |
Sep 28, 2021 |
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|
Ruby |
5 |
Visualization of KEGG pathways from genomic/metagenomic samples |
Jul 19, 2018 |
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|
Python |
6 |
Assessing and Improving the quality of metagenomic assemblies |
Jun 05, 2022 |