|
|
Python |
8 |
Whole Genome Annotation Pipeline |
Aug 13, 2022 |
|
|
Python |
209 |
Eukaryotic Genome Annotation Pipeline |
Aug 16, 2022 |
|
|
Common Workflow Language |
203 |
NCBI Prokaryotic Genome Annotation Pipeline |
Aug 19, 2022 |
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|
Python |
4 |
OGAP: Organelle Genome Annotation Pipeline |
Mar 01, 2023 |
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|
Groovy |
57 |
A scalable bacterial genome assembly, annotation and analysis pipeline |
Apr 30, 2023 |
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|
Perl |
7 |
Genome assembly/prediction/annotation pipeline for the Linux command line |
Jul 01, 2021 |
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|
None |
2 |
Annotation TAAR from genome |
Nov 10, 2021 |
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|
C++ |
219 |
Genome annotation with AUGUSTUS |
Apr 21, 2023 |
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|
Perl |
36 |
Genome Annotation Without Nightmares |
Apr 19, 2023 |
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|
Python |
2 |
GENome Interactive Annotation Library |
Mar 03, 2020 |
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|
HTML |
3 |
genome annotation course within ELIXIR |
Mar 27, 2023 |
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|
Perl |
2 |
PATRIC genome annotation application code |
Jan 26, 2023 |
|
|
C++ |
103 |
Genome browser and variant annotation |
May 17, 2023 |
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|
Python |
2 |
Pipeline for fully automated prokaryotic genome annotation with peptide data from MS/MS experiments |
Mar 24, 2024 |
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|
C++ |
2 |
eukaryotic annotation pipeline |
Apr 25, 2022 |
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|
Python |
4 |
Genome Decomposition Analysis pipeline |
Jan 09, 2023 |
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|
Python |
3 |
Bacterial genome assembly pipeline |
Mar 02, 2022 |
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|
Python |
25 |
MGnify genome analysis pipeline |
Jun 16, 2022 |
|
|
Perl |
655 |
:zap: :aquarius: Rapid prokaryotic genome annotation |
Apr 20, 2023 |
|
|
Perl |
160 |
Genome Assembly and Annotation Service code |
Aug 17, 2022 |
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|
Julia |
2 |
Lolium rigidum genome assembly and annotation |
Jan 23, 2023 |
|
|
Nextflow |
81 |
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny … |
May 18, 2023 |
|
|
Python |
7 |
TIR-element-annotation pipeline. |
Mar 03, 2021 |
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|
Shell |
4 |
Metagenomic functional annotation pipeline |
May 22, 2023 |
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|
Python |
2 |
Clinical Whole Genome Sequencing Pipeline |
May 12, 2022 |
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|
Shell |
5 |
SNVPhyl whole genome phylogenomics pipeline. |
Feb 13, 2023 |
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|
Shell |
7 |
Genome Analysis Pipeline for Lecture |
May 13, 2023 |
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|
Python |
21 |
Best practices and workflow for genome annotation |
Jul 18, 2022 |
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|
Rust |
2 |
Genome annotation based on Rust and RocksDB |
Jun 19, 2023 |
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|
Perl |
4 |
Microbial annotation pipeline - in progress |
Jan 27, 2023 |
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|
Python |
18 |
Variant annotation and merging pipeline |
Feb 23, 2023 |
|
|
Perl |
4 |
DNANexus Whole Genome Bisulphite Analysis Pipeline |
Nov 15, 2018 |
|
|
JavaScript |
7 |
GIAB pipeline for benchmarking genome assemblies |
Jun 13, 2022 |
|
|
Python |
7 |
🥑 A Bacterial genome Comparison and Annotation Toolkit |
May 23, 2022 |
|
|
R |
13 |
Extract Sequence from Genome According to Annotation File |
Apr 20, 2023 |
|
|
Python |
395 |
Fast genome-wide functional annotation through orthology assignment |
Oct 17, 2022 |
|
|
Nextflow |
2 |
Nextflow workflow running prokka for bacterial genome annotation |
Apr 11, 2023 |
|
|
R |
5 |
Annotates transcriptomic sites using a genome-aware annotation |
May 03, 2023 |
|
|
Python |
7 |
UniProt genome annotation data in hg19/GRCh37 coordinates |
Mar 29, 2021 |
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|
C++ |
4 |
Sparse Binary Relation Representations for Genome Graph Annotation |
Jan 13, 2022 |
|
|
Python |
2 |
A new pipeline to perform targeted assembly given WGS reads, reference genome assemblies, and a … |
Jan 28, 2023 |
|
|
Python |
11 |
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline. |
Nov 09, 2021 |
|
|
Python |
14 |
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline |
May 24, 2022 |
|
|
Nextflow |
20 |
Whole Exome/Whole Genome Sequencing alignment pipeline |
Oct 18, 2022 |
|
|
HTML |
2 |
A repository housing a genome simulation pipeline |
Apr 18, 2023 |
|
|
Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
|
|
Python |
2 |
De novo Long-read Genome Assembly Pipeline |
Mar 07, 2024 |
|
|
Shell |
5 |
Small ncRNA annotation pipeline for transcriptomics |
Jan 20, 2022 |
|
|
Nextflow |
37 |
Simple bacterial assembly and annotation pipeline |
Aug 09, 2022 |
|
|
None |
40 |
Read Assembly and Annotation Pipeline Tool |
Aug 01, 2022 |