|
Python |
41 |
Generic human DNA variant annotation pipeline |
Apr 27, 2023 |
|
Jupyter Notebook |
4 |
Pipeline for variant annotation using Variant Effect Predictor (VEP) |
Nov 30, 2023 |
|
Python |
3 |
An empirical variant annotation and data evaluation pipeline. |
Jan 12, 2022 |
|
Groovy |
13 |
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. |
Sep 15, 2022 |
|
HTML |
3 |
Video text annotation and merging |
May 13, 2021 |
|
C++ |
103 |
Genome browser and variant annotation |
May 17, 2023 |
|
Java |
3 |
XFDF annotation merging tool |
Apr 12, 2023 |
|
C++ |
15 |
Structural variant annotation |
Apr 05, 2023 |
|
PHP |
2 |
Variant Annotation Tool |
Aug 23, 2015 |
|
Shell |
11 |
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC |
Apr 06, 2022 |
|
Shell |
6 |
Variant Interpretation Pipeline |
Mar 08, 2022 |
|
Python |
13 |
Structural variant pipeline |
Feb 04, 2022 |
|
HTML |
18 |
Variant catalogue pipeline |
Apr 19, 2023 |
|
Python |
60 |
Merging, Annotation, Validation, and Illustration of Structural variants |
Jun 29, 2022 |
|
Python |
5 |
Viral VDAP: a viral alignment, variant discovery, and annotation pipeline launched at the NCBI-Hackathon 2019 |
Aug 30, 2021 |
|
Nextflow |
2 |
variant annotation workflow with VEP |
Dec 21, 2021 |
|
HTML |
12 |
SC2 variant detection and composition pipeline |
Apr 05, 2023 |
|
C++ |
2 |
eukaryotic annotation pipeline |
Apr 25, 2022 |
|
Shell |
4 |
H3A variant calling pipeline |
Apr 20, 2021 |
|
Jupyter Notebook |
3 |
Variant and Epigenetic anNotation for Underlying Significance and Regulation |
May 11, 2017 |
|
Go |
7 |
Extremely fast Variant Call Format annotation |
May 18, 2020 |
|
C++ |
22 |
Anno is a variant annotation tool |
Jul 03, 2022 |
|
Nextflow |
37 |
Simple bacterial assembly and annotation pipeline |
Aug 09, 2022 |
|
None |
40 |
Read Assembly and Annotation Pipeline Tool |
Aug 01, 2022 |
|
Python |
2 |
Functional Annotation and Association Testing Pipeline |
Dec 20, 2022 |
|
Python |
3 |
Viral Metagenomics Assembly and Annotation Pipeline |
Dec 19, 2022 |
|
None |
5 |
SNP and variant calling pipeline for bacteria |
Feb 02, 2023 |
|
Nextflow |
186 |
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS … |
Aug 16, 2022 |
|
Common Workflow Language |
2 |
Variant caller annotation repository. Outputs from variant germline and somatic callers need annotation to add … |
Feb 17, 2021 |
|
Nim |
191 |
genetic variant expressions, annotation, and filtering for great good. |
Apr 20, 2023 |
|
Python |
7 |
TIR-element-annotation pipeline. |
Mar 03, 2021 |
|
Python |
8 |
Whole Genome Annotation Pipeline |
Aug 13, 2022 |
|
Python |
209 |
Eukaryotic Genome Annotation Pipeline |
Aug 16, 2022 |
|
Perl |
7 |
Genome annotation pipeline v2 |
Oct 13, 2022 |
|
Shell |
4 |
Metagenomic functional annotation pipeline |
May 22, 2023 |
|
Jupyter Notebook |
4 |
A bioinformatic variant calling pipeline |
Aug 24, 2017 |
|
Nextflow |
9 |
gatk4 RNA variant calling pipeline |
Aug 02, 2022 |
|
Python |
17 |
annotation pipeline for microbial genomes and metagenomes |
Jun 06, 2020 |
|
Nextflow |
2 |
Plasmid assembly, gene identification and annotation pipeline |
May 16, 2022 |
|
Python |
2 |
Snakemake pipeline for read mapping and variant calling |
Sep 08, 2022 |
|
R |
5 |
Automated Pipeline for Variant/Haplotype Calling and Filtering |
May 13, 2023 |
|
Common Workflow Language |
203 |
NCBI Prokaryotic Genome Annotation Pipeline |
Aug 19, 2022 |
|
Perl |
4 |
Microbial annotation pipeline - in progress |
Jan 27, 2023 |
|
Python |
4 |
OGAP: Organelle Genome Annotation Pipeline |
Mar 01, 2023 |
|
C |
10 |
TOPMed Freeze 3 variant calling pipeline |
Nov 24, 2021 |
|
Shell |
20 |
Variant Calling Pipeline in Cromwell/WDL |
Nov 13, 2020 |
|
Nextflow |
30 |
Deep Variant as a Nextflow pipeline |
Jan 06, 2022 |
|
Nextflow |
3 |
A pipeline for assembling and annotation of vectors |
Oct 31, 2021 |
|
Python |
10 |
Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for … |
Feb 24, 2022 |
|
Jupyter Notebook |
22 |
SARS-CoV-2 variant calling and consensus assembly pipeline |
Apr 28, 2023 |