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Nextflow |
9 |
Nextflow Pipelines |
May 09, 2023 |
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Nextflow |
4 |
Nextflow HGI pipelines |
Dec 16, 2021 |
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Python |
2 |
Boilerplate code for Nextflow pipelines |
Jun 18, 2022 |
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HTML |
4 |
Empty template for nextflow pipelines |
May 26, 2020 |
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Groovy |
12 |
Params validation plugin for Nextflow pipelines |
Apr 12, 2023 |
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Java |
32 |
Simple test framework for Nextflow pipelines |
Oct 15, 2022 |
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Nextflow |
2 |
Template for creating Nextflow DSL2 pipelines |
Sep 06, 2023 |
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Nextflow |
2 |
Nextflow Demo Pipelines for Image Processing |
May 18, 2023 |
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Nextflow |
74 |
Example Nextflow pipelines and programming techniques |
Aug 03, 2022 |
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None |
34 |
List of IARC bioinformatics nextflow pipelines |
Aug 25, 2022 |
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Nextflow |
3 |
Course materials for the workflow pipelines (Nextflow) course. |
Oct 26, 2022 |
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None |
476 |
A curated list of nextflow based pipelines |
Apr 25, 2023 |
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Groovy |
2 |
A collection of NLP pipelines powered by Nextflow |
Oct 17, 2019 |
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Groovy |
5 |
Common documentation for National Genomics Infrastructure pipelines built with Nextflow |
Jan 28, 2023 |
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Nextflow |
3 |
Nextflow pipeline for CNest |
Mar 31, 2022 |
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Nextflow |
4 |
None |
Jan 12, 2022 |
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Nextflow |
4 |
MTBSeq made simple and easy using Nextflow. |
Apr 09, 2022 |
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Nextflow |
4 |
*de novo* orthologous gene predictions from bam + bed or fasta/fastq data |
Jul 22, 2021 |
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Nextflow |
4 |
Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice) |
Mar 02, 2022 |
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Nextflow |
4 |
The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository |
Mar 02, 2020 |
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Nextflow |
4 |
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq) |
May 03, 2022 |
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Nextflow |
4 |
A simple fastp-MultiQC nextflow pipeline |
Jul 13, 2022 |
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Nextflow |
4 |
An SARS-CoV-2 bioinformatics pipeline for CLIA validation using Dr. Erin Young's Cecret StaphB pipeline as … |
Jan 20, 2022 |
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Nextflow |
4 |
A proof of concept RNA-Seq pipeline with Nextflow |
Dec 20, 2018 |
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Nextflow |
4 |
Workflow leveraging the scanpy-scripts package to run Scanpy in a Nextflow workflow |
Dec 03, 2020 |
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Nextflow |
4 |
Quantification component for droplet-based studies |
Nov 17, 2021 |
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Nextflow |
4 |
None |
Jul 20, 2022 |
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Nextflow |
4 |
Nextflow training material for FAANG workshop February 2020 |
Apr 29, 2021 |
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Nextflow |
4 |
Nextflow pipeline for BWA, BWA2 and STAR alignments |
May 07, 2022 |
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Nextflow |
4 |
Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, … |
Jul 18, 2022 |
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Nextflow |
4 |
[WIP] Evaluate outcomes from genome editing experiments |
Jul 14, 2022 |
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Nextflow |
4 |
Quantitative shotgun MS proteomics |
May 05, 2022 |
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Nextflow |
4 |
A pipeline to investigate horizontal gene transfer from NGS data |
Jun 28, 2022 |
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Nextflow |
4 |
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric … |
Jun 29, 2022 |
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Nextflow |
4 |
SLAMSeq processing and analysis pipeline |
Aug 29, 2021 |
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Nextflow |
4 |
None |
May 25, 2022 |
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Nextflow |
4 |
FTW |
Aug 23, 2022 |
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Nextflow |
4 |
None |
May 22, 2019 |
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Nextflow |
5 |
Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification … |
Jan 18, 2022 |
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Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
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Nextflow |
5 |
ELIXIR VIB-CRG courses on containers (Docker + Singularity) and Nextflow. |
Jan 10, 2022 |
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Nextflow |
5 |
Single cell transcriptome analysis pipeline based on DropEst |
Sep 15, 2020 |
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Nextflow |
5 |
Coprolite host Identification pipeline |
Aug 18, 2021 |
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Nextflow |
5 |
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery |
May 26, 2022 |
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Nextflow |
5 |
None |
Dec 14, 2021 |
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Nextflow |
5 |
Assessing the quality of prokaryotic genomes, filtering and dereplication |
Apr 07, 2022 |
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Nextflow |
6 |
Pipeline to build a massive tree from global data |
May 24, 2022 |
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Nextflow |
6 |
None |
Jun 11, 2022 |
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Nextflow |
6 |
Slow-paced containers and Nextflow course for beginners. |
Jun 20, 2022 |
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Nextflow |
6 |
Quality control pipeline for RamDA-seq experiments. |
Dec 03, 2020 |