|
Nextflow |
76 |
RNA-seq analysis pipeline for detection gene-fusions |
Jul 28, 2022 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
HTML |
71 |
A simple RNA-Seq differential gene expression pipeline using Nextflow |
May 15, 2023 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
Python |
14 |
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification. |
Aug 09, 2022 |
|
None |
57 |
RNA-seq workflow: gene-level exploratory analysis and differential expression |
Apr 27, 2023 |
|
R |
2 |
GCA: Gene Correlation Analysis for Single-cell RNA-seq data |
Jun 06, 2019 |
|
Python |
2 |
RNA-Seq NGS Pipeline |
Feb 21, 2023 |
|
R |
18 |
RNA-seq analysis |
Sep 21, 2022 |
|
Python |
12 |
Normalization of RNA-seq gene expression |
Apr 21, 2023 |
|
Python |
18 |
Rna-seq pipeline, From FASTQ to differential expression analysis... |
Oct 08, 2020 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
|
Python |
35 |
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data. |
Jul 25, 2022 |
|
R |
4 |
A nextflow pipeline for performing bacterial RNA-Seq data analysis. |
Apr 17, 2023 |
|
Python |
20 |
Bulk RNA-seq analysis. |
Aug 07, 2022 |
|
R |
9 |
RNA-seq analysis scripts |
Apr 04, 2022 |
|
None |
2 |
Automated RNA-Seq Analysis |
Sep 14, 2021 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
Nextflow |
3 |
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis |
Apr 08, 2023 |
|
R |
16 |
DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline |
Apr 09, 2023 |
|
Python |
6 |
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments |
Mar 06, 2023 |
|
wdl |
26 |
ENCODE long read RNA-seq pipeline |
Aug 09, 2022 |
|
R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
|
Python |
25 |
Zavolan-Lab Automated RNA-Seq Pipeline |
Apr 10, 2023 |
|
Python |
5 |
Epitope discovery pipeline for RNA-seq |
Jan 25, 2020 |
|
Java |
10 |
Unix-based RNA-seq quantification pipeline |
Dec 01, 2021 |
|
R |
260 |
Differential analysis of RNA-Seq |
Aug 17, 2022 |
|
R |
7 |
Scripts for RNA seq analysis |
Apr 15, 2022 |
|
Python |
16 |
scripts for RNA-Seq analysis |
Mar 06, 2023 |
|
Shell |
2 |
semi automatic RNA-Seq analysis |
Jan 20, 2023 |
|
R |
3 |
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq. |
Jan 20, 2022 |
|
C++ |
72 |
Pipeline for initial analysis of droplet-based single-cell RNA-seq data |
Jul 07, 2022 |
|
Python |
4 |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline |
Apr 13, 2023 |
|
R |
10 |
Profile RNA-seq data using published TB gene signatures |
Nov 22, 2022 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
Shell |
2 |
Yet another Grape RNA-Seq analyses pipeline |
Jun 03, 2018 |
|
R |
2 |
GRIP-seq analysis pipeline |
Jun 21, 2022 |
|
C++ |
36 |
BS-seq analysis pipeline |
Mar 16, 2023 |
|
Shell |
9 |
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq … |
Sep 14, 2022 |
|
Python |
3 |
RNA-Seq Analysis - Jeremy Leipzig M6A |
Feb 09, 2022 |
|
CSS |
20 |
Workshop • Analysis of RNA-seq data |
Jul 18, 2022 |
|
HTML |
4 |
RNA-seq analysis for psychENCODE R01 |
Nov 09, 2022 |
|
R |
22 |
Single cell RNA-seq analysis bundle |
Mar 28, 2023 |
|
Python |
2 |
General Small RNA-seq Analysis Tool |
Dec 04, 2022 |
|
Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |