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Nextflow
Last Updated
Jan 17, 2022
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Nextflow | 274 | A curated collection of Nextflow implementation patterns | Apr 18, 2023 | |
| Nextflow | 3 | Nextflow pipeline for CNest | Mar 31, 2022 | |
| Nextflow | 4 | None | Jan 12, 2022 | |
| Nextflow | 4 | MTBSeq made simple and easy using Nextflow. | Apr 09, 2022 | |
| Nextflow | 4 | *de novo* orthologous gene predictions from bam + bed or fasta/fastq data | Jul 22, 2021 | |
| Nextflow | 4 | Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice) | Mar 02, 2022 | |
| Nextflow | 4 | The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository | Mar 02, 2020 | |
| Nextflow | 4 | A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq) | May 03, 2022 | |
| Nextflow | 4 | A simple fastp-MultiQC nextflow pipeline | Jul 13, 2022 | |
| Nextflow | 4 | An SARS-CoV-2 bioinformatics pipeline for CLIA validation using Dr. Erin Young's Cecret StaphB pipeline as … | Jan 20, 2022 | |
| Nextflow | 4 | A proof of concept RNA-Seq pipeline with Nextflow | Dec 20, 2018 | |
| Nextflow | 4 | Workflow leveraging the scanpy-scripts package to run Scanpy in a Nextflow workflow | Dec 03, 2020 | |
| Nextflow | 4 | Quantification component for droplet-based studies | Nov 17, 2021 | |
| Nextflow | 4 | None | Jul 20, 2022 | |
| Nextflow | 4 | Nextflow training material for FAANG workshop February 2020 | Apr 29, 2021 | |
| Nextflow | 4 | Nextflow pipeline for BWA, BWA2 and STAR alignments | May 07, 2022 | |
| Nextflow | 4 | Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, … | Jul 18, 2022 | |
| Nextflow | 4 | [WIP] Evaluate outcomes from genome editing experiments | Jul 14, 2022 | |
| Nextflow | 4 | Quantitative shotgun MS proteomics | May 05, 2022 | |
| Nextflow | 4 | A pipeline to investigate horizontal gene transfer from NGS data | Jun 28, 2022 | |
| Nextflow | 4 | Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric … | Jun 29, 2022 | |
| Nextflow | 4 | SLAMSeq processing and analysis pipeline | Aug 29, 2021 | |
| Nextflow | 4 | None | May 25, 2022 | |
| Nextflow | 4 | FTW | Aug 23, 2022 | |
| Nextflow | 4 | None | May 22, 2019 | |
| Nextflow | 5 | Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification … | Jan 18, 2022 | |
| Nextflow | 5 | GENE-SWitCH project RNA-Seq analysis pipeline | Jun 14, 2022 | |
| Nextflow | 5 | ELIXIR VIB-CRG courses on containers (Docker + Singularity) and Nextflow. | Jan 10, 2022 | |
| Nextflow | 5 | Single cell transcriptome analysis pipeline based on DropEst | Sep 15, 2020 | |
| Nextflow | 5 | Coprolite host Identification pipeline | Aug 18, 2021 | |
| Nextflow | 5 | Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery | May 26, 2022 | |
| Nextflow | 5 | None | Dec 14, 2021 | |
| Nextflow | 5 | Assessing the quality of prokaryotic genomes, filtering and dereplication | Apr 07, 2022 | |
| Nextflow | 6 | Pipeline to build a massive tree from global data | May 24, 2022 | |
| Nextflow | 6 | None | Jun 11, 2022 | |
| Nextflow | 6 | Slow-paced containers and Nextflow course for beginners. | Jun 20, 2022 | |
| Nextflow | 6 | Quality control pipeline for RamDA-seq experiments. | Dec 03, 2020 | |
| Nextflow | 6 | Validation studies for docking related studies | Nov 20, 2021 | |
| Nextflow | 6 | Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC) | Nov 22, 2021 | |
| Nextflow | 7 | Small variant calling for human samples | Jul 30, 2022 | |
| Nextflow | 7 | Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices | Dec 11, 2021 | |
| Nextflow | 7 | Slow-paced 4-day containers and Nextflow course for beginners. | Mar 10, 2022 | |
| Nextflow | 7 | The set of NGS processing pipelines used at Babraham | Feb 07, 2022 | |
| Nextflow | 7 | Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous … | May 16, 2022 | |
| Nextflow | 7 | Screening of functional components and natural products from assembled contigs | Aug 19, 2022 | |
| Nextflow | 7 | None | Jul 18, 2022 | |
| Nextflow | 7 | MNase-seq analysis pipeline using BWA and DANPOS2. | May 25, 2022 | |
| Nextflow | 7 | None | Apr 12, 2021 | |
| Nextflow | 8 | Dryad is a pipeline to construct reference free core-genome or SNP phylogenetic trees for examining … | Dec 25, 2021 | |
| Nextflow | 8 | None | Jun 14, 2022 |