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48 |
Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data |
Oct 10, 2022 |
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R |
37 |
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities |
Jul 18, 2022 |
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R |
16 |
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data |
Aug 03, 2022 |
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Jupyter Notebook |
19 |
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially … |
Jul 05, 2022 |
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34 |
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution |
Aug 17, 2022 |
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4 |
An R package for visualization and analysis of spatially-resolved gene expression |
Feb 15, 2023 |
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16 |
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses |
Apr 28, 2023 |
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Nextflow |
10 |
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell … |
Jul 27, 2022 |
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Python |
4 |
A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic … |
Apr 12, 2023 |
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Jupyter Notebook |
3 |
This repository holds resources to reproduce and further explore analyses in the accompanying manuscript |
May 22, 2023 |
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Jupyter Notebook |
5 |
Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data |
May 04, 2023 |
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2 |
Analysis scripts for the Ebbing et manuscript: "Spatially-resolved transcriptomics in C. elegans identifies sex-specific differences … |
Feb 19, 2022 |
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28 |
Data processing and analysis related code associated with the study "A single-cell and spatially resolved … |
Jun 07, 2022 |
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4 |
Code to reproduce analyses in our paper on the landscape of gene expression in the … |
Apr 25, 2023 |
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Jupyter Notebook |
10 |
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell … |
Jul 27, 2022 |
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R |
20 |
ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and … |
Jun 04, 2022 |
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Python |
3 |
GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of … |
Aug 12, 2022 |
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Jupyter Notebook |
3 |
Repository containing the code to reproduce the analyses contained in our manuscript: Optimising expression quantitative … |
Jul 06, 2023 |
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2 |
This repository contains code used for analyses and visualizations for the paper Spatially resolved whole … |
Oct 26, 2022 |
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Python |
14 |
According to all known laws of aviation, there is no way that a bee should … |
Apr 13, 2023 |