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HTML |
4 |
Snakemake workshop |
Apr 18, 2023 |
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Python |
2 |
Example code for snakemake workshop |
Aug 12, 2022 |
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Python |
8 |
One-day Snakemake workshop. |
May 20, 2022 |
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Vim script |
2 |
Snakemake Vim definitions, copied from https://bitbucket.org/snakemake/snakemake/ |
Oct 26, 2020 |
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Python |
2 |
Customisable rules for snakemake. |
Mar 14, 2023 |
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HTML |
2 |
Snakemake homepage |
Mar 23, 2022 |
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Python |
10 |
Snakemake + BIDS |
Mar 31, 2023 |
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Python |
6 |
Introduction to Snakemake for Bioinformatics |
Jun 30, 2022 |
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Python |
2 |
snakemake profiles for cluster configuration |
Aug 07, 2020 |
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Python |
3 |
Snakemake pipeline for running HUMAnN2 |
Jul 22, 2022 |
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None |
2 |
Snakemake pipeline for running MetaPhlAn3 |
Feb 23, 2023 |
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Python |
12 |
Snakemake workflow for neoantigen prediction |
Apr 28, 2023 |
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Python |
3 |
A snakemake for GTDB-tk |
Mar 07, 2023 |
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Python |
5 |
Snakemake-pipeline for benchmarking genotypers |
Jan 15, 2023 |
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Python |
14 |
:snake: Snakemake wrappers for bioinformatics. |
Feb 17, 2023 |
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Python |
9 |
snakemake rules for running anvio |
Jan 14, 2021 |
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Python |
2 |
Snakemake Workflow For WGBS Data |
Jan 10, 2022 |
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Shell |
5 |
Snakemake + Singularity + SLURM |
Feb 10, 2022 |
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Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
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Python |
2 |
Snakemake Benchmark Analysis |
Apr 28, 2022 |
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Python |
2 |
Tutorial on snakemake |
Sep 29, 2022 |
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Python |
8 |
A snakemake workflow for metagenomic projects |
Apr 01, 2022 |
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Python |
2 |
Snakemake workflow for comprehensive ONT analysis |
Mar 31, 2023 |
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Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
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Python |
2 |
A Snakemake workflow for fungal metatranscriptomics |
Feb 15, 2022 |
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Python |
2 |
A Sphinx extension for Snakemake workflows |
May 27, 2022 |
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Python |
3 |
Snakemake workflow for evaluation of assemblies |
Mar 07, 2022 |
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Python |
20 |
A template repository for snakemake workflows. |
Aug 16, 2022 |
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Python |
8 |
Snakemake workflow for the vg toolkit. |
Apr 25, 2023 |
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Python |
53 |
A cookiecutter template for Snakemake workflows |
Jan 11, 2023 |
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Python |
4 |
:snake::wrench: Snakemake wrappers for GATK. |
May 27, 2021 |
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Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
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Python |
14 |
Snakemake pipeline for benchmarking read mappers |
May 04, 2023 |
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Jupyter Notebook |
2 |
Snakemake pipeline for two pass alignment |
Apr 04, 2021 |
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Python |
2 |
A snakemake workflow for using tsinfer |
Oct 30, 2023 |
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Python |
2 |
Snakemake pipeline for running TOBIAS analysis |
Feb 22, 2024 |
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Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
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Python |
8 |
Snakemake with pytest example |
Aug 17, 2021 |
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Python |
64 |
ATAC-seq snakemake pipeline |
Oct 19, 2022 |
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Python |
11 |
Ancient microbiome snakemake workflow |
Mar 15, 2023 |
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Python |
2 |
Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as … |
Jul 18, 2021 |
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Shell |
3 |
Barebones framework for creating new snakemake workflows. |
Aug 01, 2022 |
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Dockerfile |
3 |
Example data for the official Snakemake tutorial |
May 17, 2022 |
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Python |
14 |
snakemake workflow for post-processing scATACseq data |
Oct 04, 2022 |
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Python |
17 |
A snakemake pipeline for 10X genomics cellranger |
Apr 20, 2023 |
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Python |
50 |
A template for standard compliant snakemake-workflows |
May 01, 2023 |
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Python |
16 |
snakemake pipeline for Hi-C post-processing |
Feb 21, 2023 |
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Python |
3 |
Snakemake pipeline for SV discovery and analysis |
Dec 23, 2022 |
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Python |
3 |
Snakemake pipeline for variant calling using GATK |
Mar 02, 2023 |
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R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |