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Python |
2 |
Snakemake Workflow For WGBS Data |
Jan 10, 2022 |
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Python |
16 |
snakemake pipeline for Hi-C post-processing |
Feb 21, 2023 |
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Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
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HTML |
3 |
Snakemake workflow for processing metagenomics data and comparing the impact of different bioinformatics tools |
May 05, 2023 |
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Python |
29 |
Amplicon sequence processing workflow using QIIME 2 and Snakemake |
Apr 01, 2023 |
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Python |
8 |
A Snakemake workflow for Fermi-LAT data reduction |
Oct 27, 2023 |
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Python |
12 |
Snakemake workflow for neoantigen prediction |
Apr 28, 2023 |
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R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
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Python |
11 |
Ancient microbiome snakemake workflow |
Mar 15, 2023 |
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Python |
5 |
Snakemake workflow for functional analysis of metagenomic WGS read data. |
Mar 12, 2022 |
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Python |
42 |
Snakemake-based workflow for detecting structural variants in WGS data |
Jul 31, 2022 |
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Python |
8 |
A snakemake workflow for metagenomic projects |
Apr 01, 2022 |
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Python |
2 |
Snakemake workflow for comprehensive ONT analysis |
Mar 31, 2023 |
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Python |
2 |
A Snakemake workflow for fungal metatranscriptomics |
Feb 15, 2022 |
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Python |
3 |
Snakemake workflow for evaluation of assemblies |
Mar 07, 2022 |
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Python |
8 |
Snakemake workflow for the vg toolkit. |
Apr 25, 2023 |
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Python |
2 |
A snakemake workflow for using tsinfer |
Oct 30, 2023 |
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Python |
26 |
Data Processing Framework - Post Processing Module |
Aug 11, 2022 |
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Python |
4 |
snakemake workflow for random forest based feature selection on chromHMM data |
Sep 10, 2022 |
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Python |
2 |
Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data |
Jun 29, 2023 |
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Python |
2 |
Automated workflow processing for GIS data |
Jan 28, 2023 |
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Python |
2 |
processing workflow for visualization data prep |
Apr 06, 2023 |
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Python |
10 |
:snake: DRAGEN/bcbio Tumor/Normal workflow post-processing |
Jun 14, 2022 |
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Python |
3 |
Small snakemake best practice workflow |
Mar 18, 2022 |
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R |
4 |
R, python, unix tools for 10x scATACseq data |
Dec 23, 2021 |
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Python |
5 |
A Snakemake workflow to process paired-end RNA-Seq data. |
Sep 23, 2021 |
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Python |
5 |
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR |
Oct 25, 2022 |
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Jupyter Notebook |
9 |
Modular snakemake workflow for assembly-based metagenomics |
Dec 06, 2022 |
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Python |
2 |
A snakemake workflow for assembly with HiFi |
May 01, 2024 |
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Jupyter Notebook |
2 |
Orchestrated sonar data processing workflow |
Jan 06, 2024 |
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Python |
3 |
RADSeq tool with Snakemake workflow integration for analysis of RAD sequencing data. |
Aug 13, 2022 |
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Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
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Python |
4 |
snakemake workflow comparing Genrich and MACS2 |
Nov 09, 2020 |
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Python |
5 |
Snakemake workflow to call germline variant |
Oct 15, 2019 |
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Python |
3 |
A small ncRNA workflow in Snakemake. |
Dec 07, 2022 |
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Python |
3 |
Some NGS workflow created by snakemake |
Apr 21, 2023 |
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R |
26 |
R/Bioconductor package for working with 10x scATACseq data |
Sep 29, 2022 |
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Python |
2 |
Demo scripts for post-processing SnapperGPS data |
Sep 29, 2022 |
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Python |
3 |
Tools for post-processing 21cm spectrometer data |
Apr 22, 2022 |
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Python |
3 |
Post-processing tool for atmospheric sounding data. |
Dec 08, 2022 |
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Python |
10 |
Post processing routines for analysing PTV data. |
Oct 31, 2022 |
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Python |
3 |
A Snakemake workflow for germline variant burden analyses. |
Mar 23, 2022 |
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Shell |
41 |
A Github action for running a Snakemake workflow |
Jun 15, 2022 |
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Python |
7 |
Snakemake workflow for comparison of differential abundance ranks |
Aug 14, 2022 |
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R |
149 |
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data |
Apr 27, 2023 |
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R |
11 |
Processing workflow for COVID-19 single cell data |
Jan 28, 2022 |
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Python |
2 |
Processing workflow for CGM2 model using PAF for data management and pyCGM2 for data processing. |
Jul 02, 2021 |
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Python |
3 |
Snakemake workflow to analyze bulk RNA-seq |
Nov 08, 2022 |
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None |
89 |
my notes for scATACseq analysis |
Oct 04, 2022 |
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R |
3 |
Snakemake workflow for 10X Genomics WGS analysis using TitanCNA |
Apr 20, 2022 |