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Python |
2 |
10x genomics spatial genomics software |
Dec 07, 2023 |
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Python |
218 |
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly |
Apr 24, 2023 |
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Nextflow |
10 |
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell … |
Jul 27, 2022 |
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R |
14 |
Pipeline for SpatialTranscriptomics and 10X Visium data |
Jan 20, 2023 |
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R |
16 |
SPATA Package for spatial gene expression analysis |
Apr 20, 2023 |
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R |
36 |
A Toolbox for Spatial Gene Expression Analysis |
Apr 24, 2023 |
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Jupyter Notebook |
3 |
10x Genomics analysis guides files |
Jun 17, 2023 |
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Jupyter Notebook |
12 |
ClusterMap for multi-scale clustering analysis of spatial gene expression |
Jun 28, 2022 |
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Jupyter Notebook |
3 |
ClusterMap for multi-scale clustering analysis of spatial gene expression |
Dec 22, 2021 |
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R |
10 |
Reconstruction of spatial context of gene expression with optimal transport |
Dec 08, 2021 |
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R |
5 |
Scripts to perform meta-analysis of cancer gene expression datasets |
Feb 08, 2020 |
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R |
2 |
R solution to identify gene expression signatures in microarray datasets |
Jan 04, 2023 |
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Python |
17 |
A snakemake pipeline for 10X genomics cellranger |
Apr 20, 2023 |
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R |
2 |
Gene Expression Phylogenies |
Jan 28, 2023 |
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R |
67 |
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments. |
Apr 16, 2023 |
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C++ |
61 |
10x Genomics Linked-Read Diploid De Novo Assembler |
Mar 29, 2023 |
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C |
6 |
Toolset for QC and processing 10x genomics data |
Feb 20, 2022 |
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R |
20 |
Inferring gene co-expression networks from single cell gene expression data |
Feb 07, 2023 |
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Jupyter Notebook |
2 |
Transfer learning + gene expression |
Nov 04, 2020 |
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HTML |
12 |
Gene expression viewer template |
Feb 01, 2022 |
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R |
4 |
Structural variation analysis of 10X Genomics linked-read data |
Jun 13, 2022 |
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R |
5 |
exploration of 1.3 million neurons published by 10x genomics |
Sep 23, 2018 |
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R |
3 |
Snakemake workflow for 10X Genomics WGS analysis using TitanCNA |
Apr 20, 2022 |
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Nextflow |
59 |
A single-cell RNAseq pipeline for 10X genomics data |
Jul 27, 2022 |
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Jupyter Notebook |
69 |
Towards Gene Expression Convolutions using Gene Interaction Graphs |
Apr 10, 2023 |
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R |
8 |
Analysies of gene expression data using Gene Ontology |
Nov 27, 2020 |
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HTML |
34 |
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution |
Aug 17, 2022 |
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Python |
136 |
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable … |
Apr 24, 2023 |
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TeX |
4 |
Bayesian models for gene expression |
Jan 11, 2022 |
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Rust |
19 |
Alignment-based gene expression quantification |
Feb 16, 2023 |
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R |
3 |
Analysis of gene expression microarray |
Jan 31, 2023 |
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Python |
2 |
Tissue classification from Gene Expression. |
Feb 07, 2023 |
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Dart |
3 |
Gene Expression Programming in Dart |
Aug 20, 2018 |
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Go |
44 |
Gene Expression Programming in Go |
Dec 28, 2022 |
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R |
2 |
GEDS: Gene expression display server |
Jul 26, 2023 |
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R |
2 |
Tumor Immunotherapy Gene Expression Resource |
May 16, 2023 |
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R |
2 |
Agilent gene expression microarray analysis |
May 14, 2023 |
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Groovy |
5 |
All 10x Genomics processing pipelines rolled into one containerized pipelines |
Mar 20, 2023 |
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C++ |
6 |
reformat inDrop fastqs so they look like 10X genomics fastqs |
Dec 28, 2022 |
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Shell |
3 |
10X/SS2/spatial transcriptomics/genotyping internal cloud pipeline |
Sep 19, 2022 |
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R |
37 |
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities |
Jul 18, 2022 |
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JavaScript |
11 |
AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works |
Apr 15, 2022 |
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R |
5 |
Harmonized spatial datasets and spatial search functions |
Oct 14, 2022 |
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HTML |
15 |
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads |
Sep 17, 2021 |
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R |
21 |
Scripts for processing single liver cells RNA-Seq 10X Genomics Data |
Dec 15, 2022 |
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R |
53 |
Datasets for spatial analysis |
Aug 04, 2022 |
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R |
39 |
overview of spatial datasets |
Apr 28, 2023 |
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PHP |
3 |
Automated gene expression analysis using CorEx |
Jul 19, 2022 |
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R |
15 |
:bar_chart: Gene expression in neuroexpresso database |
Mar 31, 2020 |
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Python |
137 |
Deep learning for gene expression inference |
Aug 12, 2022 |