Stars
171
Forks
52
Language
Python
Last Updated
Feb 28, 2024
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
Python | 2 | scalable identification of spatially variable genes for deciphering spatial domains | May 12, 2022 | |
Python | 3 | GenExSt: A Tool to Identify Correlation of Gene Expression after Normalization with Housekeeping Genes | Dec 01, 2022 | |
R | 8 | nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data based on … | Apr 04, 2023 | |
Jupyter Notebook | 5 | SpatialCorr: Identify gene sets with spatially varying correlation | May 11, 2022 | |
R | 37 | characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities | Jul 18, 2022 | |
Python | 65 | Train a model to predict gene expression from histology slides. | Apr 18, 2023 | |
R | 16 | SPATA Package for spatial gene expression analysis | Apr 20, 2023 | |
R | 36 | A Toolbox for Spatial Gene Expression Analysis | Apr 24, 2023 | |
R | 6 | Collection of 10X Genomics Visium spatial gene expression datasets | Nov 01, 2022 | |
R | 4 | An R package for visualization and analysis of spatially-resolved gene expression | Feb 15, 2023 | |
R | 4 | Source code associated with "Leveraging global gene expression patterns to predict expression of unmeasured genes" | Sep 29, 2020 | |
R | 7 | Computational approach to identify Survival associated Pairwise Gene Expression states. | May 18, 2021 | |
R | 2 | R solution to identify gene expression signatures in microarray datasets | Jan 04, 2023 | |
Jupyter Notebook | 12 | ClusterMap for multi-scale clustering analysis of spatial gene expression | Jun 28, 2022 | |
Jupyter Notebook | 3 | ClusterMap for multi-scale clustering analysis of spatial gene expression | Dec 22, 2021 | |
R | 10 | Reconstruction of spatial context of gene expression with optimal transport | Dec 08, 2021 | |
R | 6 | Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene … | Apr 01, 2023 | |
R | 15 | Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression" | Jul 01, 2022 | |
R | 19 | Analysis framework for integrating gut microbiome and host gene expression data | May 09, 2023 | |
HTML | 2 | Integrating gene expression and biological knowledge for drug discovery and repurposing | Jan 19, 2023 | |
Python | 5 | Correlation Graph Convolutional Networks on Gene Expression and other Biology data | Dec 10, 2022 | |
R | 67 | Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments. | Apr 16, 2023 | |
Python | 4 | A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic … | Apr 12, 2023 | |
Jupyter Notebook | 14 | Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq … | Mar 13, 2023 | |
R | 4 | an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo … | May 10, 2022 | |
R | 2 | Analysis scripts for the Ebbing et manuscript: "Spatially-resolved transcriptomics in C. elegans identifies sex-specific differences … | Feb 19, 2022 | |
Jupyter Notebook | 19 | a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially … | Jul 05, 2022 | |
Python | 4 | Implementation of deep learning and machine learning models to translate drug induced changes in gene … | Apr 18, 2022 | |
R | 84 | A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential … | Apr 22, 2023 | |
C++ | 96 | Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on … | Mar 30, 2023 | |
Jupyter Notebook | 37 | Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin … | Mar 14, 2023 | |
Python | 2 | GrayNorm is an algorithm that helps the researcher to identify suitable reference genes that are … | Jan 16, 2021 | |
Nextflow | 10 | Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell … | Jul 27, 2022 | |
R | 8 | Holds the code and data to reproduce the analyses of Danaher & Kim et a;, … | Mar 27, 2023 | |
Python | 9 | A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association … | Oct 18, 2020 | |
MATLAB | 7 | vPECA is a Variants interpretation method by Paired Expression and Chromatin Accessibility data which can … | Apr 01, 2023 | |
Java | 2 | :1234: Calculates the ratio of nonsynonymous (Ka) to synonymous (Ks) nucleotide substitution rates inorder to … | Jan 27, 2022 | |
Python | 18 | A Python implementation of the model described in our publication "A convolutional neural network for … | Jun 27, 2022 | |
R | 16 | R package to infer spatial location of neuronal subpopulations within the developing mouse brain by … | Apr 24, 2023 | |
R | 4 | A two-stage regression method that can be used when various input data types are correlated, … | Apr 02, 2022 | |
Python | 2 | Enhancers are small regions of DNA that bind to proteins, which enhance the tran-scription of … | Apr 28, 2022 | |
Python | 3 | Eulerian Video Magnification | Jan 22, 2022 | |
Python | 3 | Repology bulk exporter | Aug 12, 2022 | |
Python | 3 | Repology vulnerability data updating daemon | Jun 10, 2022 | |
Python | 3 | Bot to update Wikidata software project entries with information from Repology | Oct 06, 2020 | |
Python | 3 | Python solution to conference scheduling problem | Apr 28, 2020 | |
Python | 3 | None | Sep 21, 2022 | |
Python | 3 | 3D slicer extension for interactive medical image segmentation | Sep 05, 2022 | |
Python | 3 | These scripts generate the "color fingerprint" of a movie by clustering the dominant colors through … | Apr 17, 2022 | |
Python | 3 | the smol and stupid content tracker (this is just a demo, don't use it in … | Feb 04, 2021 |